About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_036071-T1RIBOSOMAL PROTEIN S6 KINASE
OS493_036072-T1TRANSLATION INITIATION FACTOR IF-2-RELATED
OS493_036073-T1OVOCHYMASE-RELATED
OS493_036074-T1
OS493_036075-T1BETA-CAROTENE DIOXYGENASE
OS493_036076-T1
OS493_036077-T1
OS493_036078-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
OS493_036079-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
OS493_036080-T1
OS493_036081-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
OS493_036082-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
OS493_036083-T1MITOCHONDRIAL DIVISION PROTEIN 1-RELATED
OS493_036084-T1
OS493_036086-T1
OS493_036087-T1SERINE/THREONINE-PROTEIN KINASE
OS493_036088-T1SERINE/THREONINE-PROTEIN KINASE
OS493_036089-T1PDZ DOMAIN CONTAINING PROTEIN
OS493_036090-T1
OS493_036091-T1
OS493_036092-T1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
OS493_036093-T1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
OS493_036094-T1MULTIPLE PDZ DOMAIN PROTEIN
OS493_036095-T1DNA POLYMERASE TYPE-X FAMILY MEMBER
OS493_036096-T12-OXOGLUTARATE DEHYDROGENASE
OS493_036097-T12-OXOGLUTARATE DEHYDROGENASE
OS493_036098-T1UPF0728 PROTEIN C10ORF53
OS493_036099-T1POLY [ADP-RIBOSE] POLYMERASE
OS493_036100-T1CYTOCHROME P450 FAMILY 46 SUBFAMILY A
OS493_036101-T1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED
OS493_036102-T1GLIAL CELLS MISSING RELATED/GLIDE
OS493_036103-T1
OS493_036104-T1
OS493_036105-T1
OS493_036106-T1
OS493_036107-T1
OS493_036108-T1
OS493_036109-T1
OS493_036110-T1HEAT SHOCK 70 KDA PROTEIN 14
OS493_036111-T1PROTEIN G1-LIKE2
OS493_036112-T1
OS493_036113-T1
OS493_036114-T1
OS493_036115-T1
OS493_036116-T1
OS493_036117-T1
OS493_036118-T1
OS493_036119-T1
OS493_036120-T1
OS493_036121-T1
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