About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_033325-T1
LLU|FUN_033326-T1
LLU|FUN_033327-T1
LLU|FUN_033328-T1SLEI FAMILY PROTEIN
LLU|FUN_033329-T1SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
LLU|FUN_033330-T1
LLU|FUN_033331-T1
LLU|FUN_033332-T1SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN
LLU|FUN_033333-T1UNCHARACTERIZED
LLU|FUN_033334-T1SIMILAR TO RIKEN CDNA 2310022B05
LLU|FUN_033335-T1DELTA(14)-STEROL REDUCTASE
LLU|FUN_033336-T1DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED
LLU|FUN_033337-T1
LLU|FUN_033338-T1DELTA(14)-STEROL REDUCTASE
LLU|FUN_033339-T1
LLU|FUN_033340-T1
LLU|FUN_033341-T1
LLU|FUN_033342-T1CASEIN KINASE-RELATED
LLU|FUN_033343-T1CASEIN KINASE-RELATED
LLU|FUN_033344-T1CASEIN KINASE-RELATED
LLU|FUN_033345-T1
LLU|FUN_033346-T1EXPRESSED PROTEIN
LLU|FUN_033347-T1GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE
LLU|FUN_033348-T1SLL0310 PROTEIN
LLU|FUN_033349-T1
LLU|FUN_033350-T1
LLU|FUN_033351-T1SNF2/RAD54 HELICASE FAMILY
LLU|FUN_033352-T1PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR
LLU|FUN_033353-T1PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR
LLU|FUN_033354-T1
LLU|FUN_033355-T1PYRIDOXAL KINASE
LLU|FUN_033356-T1PYRIDOXAL KINASE
LLU|FUN_033357-T1MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED
LLU|FUN_033358-T1PROTEIN SON
LLU|FUN_033359-T1DOWNSTREAM NEIGHBOR OF SON
LLU|FUN_033360-T1BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED
LLU|FUN_033361-T1PEPTIDASE M20
LLU|FUN_033362-T1PEPTIDASE M20
LLU|FUN_033363-T1AROMATIC AMINO ACID HYDROXYLASE
LLU|FUN_033364-T1
LLU|FUN_033365-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
LLU|FUN_033366-T1HISTIDINE-RICH GLYCOPROTEIN
LLU|FUN_033367-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
LLU|FUN_033368-T1
LLU|FUN_033369-T1
LLU|FUN_033370-T1
LLU|FUN_033371-T1
LLU|FUN_033372-T1
LLU|FUN_033373-T1
LLU|FUN_033374-T1
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