Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_033325-T1 | |
LLU|FUN_033326-T1 | |
LLU|FUN_033327-T1 | |
LLU|FUN_033328-T1 | SLEI FAMILY PROTEIN |
LLU|FUN_033329-T1 | SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
LLU|FUN_033330-T1 | |
LLU|FUN_033331-T1 | |
LLU|FUN_033332-T1 | SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN |
LLU|FUN_033333-T1 | UNCHARACTERIZED |
LLU|FUN_033334-T1 | SIMILAR TO RIKEN CDNA 2310022B05 |
LLU|FUN_033335-T1 | DELTA(14)-STEROL REDUCTASE |
LLU|FUN_033336-T1 | DEAD/H BOX POLYPEPTIDE 26/DICE1-RELATED |
LLU|FUN_033337-T1 | |
LLU|FUN_033338-T1 | DELTA(14)-STEROL REDUCTASE |
LLU|FUN_033339-T1 | |
LLU|FUN_033340-T1 | |
LLU|FUN_033341-T1 | |
LLU|FUN_033342-T1 | CASEIN KINASE-RELATED |
LLU|FUN_033343-T1 | CASEIN KINASE-RELATED |
LLU|FUN_033344-T1 | CASEIN KINASE-RELATED |
LLU|FUN_033345-T1 | |
LLU|FUN_033346-T1 | EXPRESSED PROTEIN |
LLU|FUN_033347-T1 | GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE |
LLU|FUN_033348-T1 | SLL0310 PROTEIN |
LLU|FUN_033349-T1 | |
LLU|FUN_033350-T1 | |
LLU|FUN_033351-T1 | SNF2/RAD54 HELICASE FAMILY |
LLU|FUN_033352-T1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
LLU|FUN_033353-T1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
LLU|FUN_033354-T1 | |
LLU|FUN_033355-T1 | PYRIDOXAL KINASE |
LLU|FUN_033356-T1 | PYRIDOXAL KINASE |
LLU|FUN_033357-T1 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED |
LLU|FUN_033358-T1 | PROTEIN SON |
LLU|FUN_033359-T1 | DOWNSTREAM NEIGHBOR OF SON |
LLU|FUN_033360-T1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED |
LLU|FUN_033361-T1 | PEPTIDASE M20 |
LLU|FUN_033362-T1 | PEPTIDASE M20 |
LLU|FUN_033363-T1 | AROMATIC AMINO ACID HYDROXYLASE |
LLU|FUN_033364-T1 | |
LLU|FUN_033365-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
LLU|FUN_033366-T1 | HISTIDINE-RICH GLYCOPROTEIN |
LLU|FUN_033367-T1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_033368-T1 | |
LLU|FUN_033369-T1 | |
LLU|FUN_033370-T1 | |
LLU|FUN_033371-T1 | |
LLU|FUN_033372-T1 | |
LLU|FUN_033373-T1 | |
LLU|FUN_033374-T1 |