The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides35171 | GLYCOPROTEIN HORMONE RECEPTOR |
| Paelopatides35172 | ENDONUCLEASE-RELATED |
| Paelopatides35173 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides35174 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Paelopatides35175 | |
| Paelopatides35176 | |
| Paelopatides35177 | |
| Paelopatides35178 | NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED |
| Paelopatides35179 | |
| Paelopatides35180 | UNCHARACTERIZED |
| Paelopatides35181 | |
| Paelopatides35182 | |
| Paelopatides35183 | SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED |
| Paelopatides35184 | |
| Paelopatides35185 | NEUROTRANSMITTER GATED ION CHANNEL |
| Paelopatides35186 | SI:CH211-196P9.1-RELATED |
| Paelopatides35187 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides35188 | REVERSE TRANSCRIPTASES |
| Paelopatides35189 | SMAD |
| Paelopatides35190 | 5'-NUCLEOTIDASE-RELATED |
| Paelopatides35191 | LEUKOCYTE RECEPTOR CLUSTER LRC MEMBER 1 |
| Paelopatides35192 | HEAT SHOCK REGULATED 2 |
| Paelopatides35193 | EUKARYOTIC TRANSLATION INITIATION FACTOR |
| Paelopatides35194 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
| Paelopatides35195 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
| Paelopatides35196 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| Paelopatides35197 | |
| Paelopatides35198 | SERINE/THREONINE-PROTEIN KINASE NEK |
| Paelopatides35199 | GABA-B RECEPTOR |
| Paelopatides35200 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Paelopatides35201 | |
| Paelopatides35202 | DNA HELICASE RECQ FAMILY MEMBER |
| Paelopatides35203 | AP ENDONUCLEASE |
| Paelopatides35204 | LIM DOMAIN KINASE 1 |
| Paelopatides35205 | THIOREDOXIN PEROXIDASE |
| Paelopatides35206 | |
| Paelopatides35207 | PRE-MRNA SPLICING FACTOR |
| Paelopatides35208 | PRE-MRNA SPLICING FACTOR |
| Paelopatides35209 | PRE-MRNA SPLICING FACTOR |
| Paelopatides35210 | |
| Paelopatides35211 | DENN DOMAIN-CONTAINING |
| Paelopatides35212 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| Paelopatides35213 | |
| Paelopatides35214 | SARCOGLYCAN |
| Paelopatides35215 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides35216 | GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN |
| Paelopatides35217 | DNA PRIMASE LARGE SUBUNIT |
| Paelopatides35218 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides35219 | |
| Paelopatides35220 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
