The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides35012 | EXPORTIN 4,7-RELATED |
| Paelopatides35013 | |
| Paelopatides35014 | T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN |
| Paelopatides35015 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
| Paelopatides35016 | PROTEIN CBG26694 |
| Paelopatides35017 | ENDONUCLEASE-RELATED |
| Paelopatides35018 | SUGAR KINASE |
| Paelopatides35019 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| Paelopatides35020 | BTK-BINDING PROTEIN-RELATED |
| Paelopatides35022 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Paelopatides35023 | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN |
| Paelopatides35024 | BTK-BINDING PROTEIN-RELATED |
| Paelopatides35025 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides35026 | |
| Paelopatides35027 | |
| Paelopatides35028 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
| Paelopatides35029 | CYTOCHROME P450 FAMILY 1 |
| Paelopatides35030 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
| Paelopatides35031 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
| Paelopatides35032 | |
| Paelopatides35033 | FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) |
| Paelopatides35034 | |
| Paelopatides35035 | |
| Paelopatides35036 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides35037 | UNCHARACTERIZED |
| Paelopatides35038 | |
| Paelopatides35039 | HEPARAN SULFATE 2-O-SULFOTRANSFERASE |
| Paelopatides35040 | ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE |
| Paelopatides35041 | DEADENYLATION COMPLEX SUBUNIT PAN3 |
| Paelopatides35042 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| Paelopatides35043 | |
| Paelopatides35044 | |
| Paelopatides35045 | NETRIN/LAMININ-RELATED |
| Paelopatides35046 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49 |
| Paelopatides35047 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides35048 | CADHERIN-23 |
| Paelopatides35049 | CADHERIN-23 |
| Paelopatides35050 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Paelopatides35051 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides35052 | PLATELET-DERIVED GROWTH FACTOR RECEPTOR LIKE |
| Paelopatides35053 | PROHIBITIN |
| Paelopatides35054 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| Paelopatides35055 | |
| Paelopatides35056 | |
| Paelopatides35057 | |
| Paelopatides35059 | OTU DOMAIN CONTAINING PROTEIN |
| Paelopatides35060 | |
| Paelopatides35061 | SPERM ASSOCIATED ANTIGEN 7 |
| Paelopatides35062 | RFWD3 PROTEIN |
| Paelopatides35063 | O-ACYLTRANSFERASE |
