Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_035038-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_035039-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_035040-T1 | AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED |
OS493_035041-T1 | PHOSPHATASE WITH HOMOLOGY TO TENSIN |
OS493_035042-T1 | SERINE/THREONINE PROTEIN KINASE |
OS493_035043-T1 | |
OS493_035044-T1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
OS493_035045-T1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
OS493_035046-T1 | |
OS493_035047-T1 | THIOSULFATE SULFERTANSFERASE |
OS493_035048-T1 | THIOSULFATE SULFERTANSFERASE |
OS493_035049-T1 | GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45 |
OS493_035050-T1 | NKAP DOMAIN-CONTAINING 1 |
OS493_035051-T1 | PHOSPHOLIPASE D - RELATED |
OS493_035052-T1 | |
OS493_035053-T1 | |
OS493_035054-T1 | UNCHARACTERIZED |
OS493_035055-T1 | |
OS493_035056-T1 | NUCLEOTIDE KINASE |
OS493_035057-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_035058-T1 | DOLICHYL GLYCOSYLTRANSFERASE |
OS493_035060-T1 | ATP PHOSPHORIBOSYLTRANSFERASE ATP-PRTASE |
OS493_035061-T1 | WD40 REPEAT PROTEIN |
OS493_035062-T1 | RAN BINDING PROTEIN |
OS493_035063-T1 | |
OS493_035064-T1 | RETINOL DEHYDROGENASE-RELATED |
OS493_035065-T1 | RETINOL DEHYDROGENASE-RELATED |
OS493_035066-T1 | |
OS493_035067-T1 | |
OS493_035068-T1 | OS04G0122200 PROTEIN |
OS493_035069-T1 | |
OS493_035070-T1 | |
OS493_035071-T1 | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED |
OS493_035072-T1 | G PROTEIN-COUPLED RECEPTOR-RELATED |
OS493_035073-T1 | RECEPTOR KINASE-LIKE PROTEIN XA21 |
OS493_035074-T1 | |
OS493_035075-T1 | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED |
OS493_035076-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED |
OS493_035077-T1 | GLYCOPROTEIN HORMONE RECEPTOR |
OS493_035078-T1 | INTELECTIN |
OS493_035079-T1 | |
OS493_035080-T1 | |
OS493_035081-T1 | INTELECTIN |
OS493_035082-T1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
OS493_035083-T1 | |
OS493_035084-T1 | |
OS493_035086-T1 | PHOSPHOACETYLGLUCOSAMINE MUTASE |
OS493_035087-T1 | PHOSPHOACETYLGLUCOSAMINE MUTASE |
OS493_035088-T1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
OS493_035089-T1 | DNA POLYMERASE SUBUNIT GAMMA-1 |