About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_013984-T1PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
OS493_013985-T1-
OS493_013986-T1WD40 REPEAT PROTEIN
OS493_013987-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
OS493_013988-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
OS493_013989-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
OS493_013990-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
OS493_013991-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
OS493_013992-T16-PHOSPHOGLUCONATE DEHYDROGENASE
OS493_013993-T1UNCHARACTERIZED PROTEIN C1ORF50
OS493_013994-T1TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11
OS493_013995-T1FANCONI ANEMIA GROUP E PROTEIN
OS493_013996-T1AAA-FAMILY ATPASE
OS493_013997-T1AAA-FAMILY ATPASE
OS493_013998-T126S PROTEASOME REGULATORY SUBUNIT
OS493_013999-T1-
OS493_014000-T1-
OS493_014001-T1-
OS493_014002-T126S PROTEASOME REGULATORY SUBUNIT
OS493_014003-T1AAA-FAMILY ATPASE
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