Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_035090-T1 | |
OS493_035091-T1 | |
OS493_035092-T1 | HYDROXYMETHYLGLUTARYL-COA LYASE |
OS493_035093-T1 | HYDROXYMETHYLGLUTARYL-COA LYASE |
OS493_035094-T1 | HYDROXYMETHYLGLUTARYL-COA LYASE |
OS493_035095-T1 | HYDROXYMETHYLGLUTARYL-COA LYASE |
OS493_035096-T1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
OS493_035097-T1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
OS493_035098-T1 | AQUAPORIN TRANSPORTER |
OS493_035099-T1 | AQUAPORIN TRANSPORTER |
OS493_035100-T1 | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER |
OS493_035101-T1 | |
OS493_035102-T1 | |
OS493_035103-T1 | |
OS493_035104-T1 | T-CELL LYMPHOMA BREAKPOINT-ASSOCIATED TARGET 1-RELATED |
OS493_035105-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_035106-T1 | |
OS493_035107-T1 | |
OS493_035110-T1 | |
OS493_035111-T1 | - |
OS493_035112-T1 | COX ASSEMBLY MITOCHONDRIAL PROTEIN |
OS493_035113-T1 | COX ASSEMBLY MITOCHONDRIAL PROTEIN |
OS493_035114-T1 | ADIPOR/PROGESTIN RECEPTOR-RELATED |
OS493_035116-T1 | JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE |
OS493_035117-T1 | JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE |
OS493_035118-T1 | |
OS493_035119-T1 | |
OS493_035120-T1 | TRANSMEMBRANE 7 SUPERFAMILY MEMBER 3 |
OS493_035121-T1 | TRANSMEMBRANE 7 SUPERFAMILY MEMBER 3 |
OS493_035122-T1 | FORKHEAD BOX PROTEIN J2 FAMILY MEMBER |
OS493_035123-T1 | |
OS493_035124-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_035125-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_035126-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_035127-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_035128-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_035129-T1 | |
OS493_035130-T1 | PEROXISOMAL BIOGENESIS FACTOR 3 |
OS493_035131-T1 | BCL-2 RELATED |
OS493_035132-T1 | |
OS493_035133-T1 | 39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL |
OS493_035134-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_035135-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_035136-T1 | |
OS493_035137-T1 | ZINC FINGER PROTEIN |
OS493_035138-T1 | |
OS493_035139-T1 | DED DOMAIN-CONTAINING PROTEIN |
OS493_035140-T1 | |
OS493_035141-T1 | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED |
OS493_035142-T1 | RUBY-EYE2-LIKE PROTEIN |