About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_034907-T1
OS493_034908-T1GUANYLATE BINDING PROTEIN
OS493_034909-T1RYBP AND YAF2-RELATED
OS493_034910-T1E3 UBIQUITIN-PROTEIN LIGASE RAD18
OS493_034911-T1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17
OS493_034912-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE
OS493_034913-T1ARGININE OR CREATINE KINASE
OS493_034914-T1ARGININE OR CREATINE KINASE
OS493_034915-T1ARGININE OR CREATINE KINASE
OS493_034916-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_034918-T1
OS493_034919-T1
OS493_034920-T1WD REPEAT DOMAIN-RELATED
OS493_034921-T1WD REPEAT DOMAIN-RELATED
OS493_034922-T1SYNTHASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_7G04190)-RELATED
OS493_034923-T1
OS493_034924-T1
OS493_034925-T1
OS493_034926-T1
OS493_034928-T1
OS493_034929-T1
OS493_034930-T1
OS493_034931-T1
OS493_034932-T1
OS493_034933-T1
OS493_034935-T1
OS493_034936-T1
OS493_034937-T1KH DOMAIN CONTAINING RNA BINDING PROTEIN
OS493_034938-T1
OS493_034939-T1PROTEIN CBG23806
OS493_034940-T1
OS493_034941-T1
OS493_034942-T1
OS493_034943-T1
OS493_034944-T1KH DOMAIN CONTAINING RNA BINDING PROTEIN
OS493_034959-T1ENDORIBONUCLEASE LACTB2
OS493_034960-T1
OS493_034962-T1ENDORIBONUCLEASE LACTB2
OS493_034973-T1
OS493_034974-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
OS493_034975-T1PROTEIN SIDEKICK
OS493_034976-T1
OS493_034977-T1
OS493_034978-T1RECQ-MEDIATED GENOME INSTABILITY PROTEIN 2 RMI2
OS493_034979-T1HISTONE DEACETYLASE HDAC1-RELATED
OS493_034980-T1HISTONE DEACETYLASE 2-RELATED
OS493_034981-T1ACROSIN-RELATED
OS493_034982-T1VITELLOGENIN-RELATED
OS493_034983-T1
OS493_034984-T1
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