Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_034738-T1 | AEROLYSIN-LIKE PROTEIN-RELATED |
OS493_034739-T1 | SI:DKEY-19B23.11-RELATED |
OS493_034740-T1 | ANKYRIN REPEAT PROTEIN |
OS493_034741-T1 | |
OS493_034742-T1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
OS493_034743-T1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
OS493_034744-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_034745-T1 | |
OS493_034746-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_034747-T1 | |
OS493_034748-T1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
OS493_034749-T1 | |
OS493_034750-T1 | |
OS493_034751-T1 | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
OS493_034752-T1 | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
OS493_034753-T1 | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
OS493_034754-T1 | |
OS493_034755-T1 | |
OS493_034756-T1 | |
OS493_034757-T1 | |
OS493_034758-T1 | |
OS493_034759-T1 | |
OS493_034760-T1 | |
OS493_034762-T1 | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
OS493_034763-T1 | |
OS493_034764-T1 | |
OS493_034765-T1 | |
OS493_034766-T1 | |
OS493_034767-T1 | |
OS493_034769-T1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
OS493_034770-T1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
OS493_034771-T1 | |
OS493_034772-T1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
OS493_034773-T1 | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED |
OS493_034774-T1 | FACIOGENITAL DYSPLASIA PROTEIN |
OS493_034775-T1 | |
OS493_034776-T1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
OS493_034777-T1 | HELICASE WITH DEATH DOMAIN-RELATED |
OS493_034779-T1 | CYSTEINE-RICH PDF MOTIF DOMAIN-CONTAINING PROTEIN 1 |
OS493_034780-T1 | 1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE |
OS493_034782-T1 | FANCONI ANEMIA GROUP D2 PROTEIN |
OS493_034783-T1 | FANCONI ANEMIA GROUP D2 PROTEIN |
OS493_034784-T1 | COILED-COIL DOMAIN CONTAINING PROTEIN 9 |
OS493_034785-T1 | GLUTAREDOXIN 2 |
OS493_034786-T1 | GLUTAREDOXIN 2 |
OS493_034788-T1 | |
OS493_034789-T1 | |
OS493_034790-T1 | |
OS493_034791-T1 | |
OS493_034792-T1 |