Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_034688-T1 | |
OS493_034689-T1 | CENTAURIN-GAMMA-1A |
OS493_034690-T1 | |
OS493_034691-T1 | |
OS493_034692-T1 | ARF-GAP WITH DUAL PH DOMAIN-CONTAINING PROTEIN 1-LIKE PROTEIN |
OS493_034693-T1 | N-ACETYLTRANSFERASE 9 |
OS493_034694-T1 | UNCHARACTERIZED |
OS493_034695-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_034696-T1 | |
OS493_034697-T1 | |
OS493_034698-T1 | - |
OS493_034699-T1 | |
OS493_034700-T1 | |
OS493_034701-T1 | |
OS493_034702-T1 | |
OS493_034703-T1 | |
OS493_034704-T1 | FAS-BINDING FACTOR 1 |
OS493_034705-T1 | THROMBOSPONDIN-TYPE LAMININ G DOMAIN AND EAR REPEAT-CONTAINING |
OS493_034706-T1 | ACTIN |
OS493_034707-T1 | |
OS493_034708-T1 | MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD1 MITOTIC ARREST DEFICIENT-LIKE PROTEIN 1 |
OS493_034709-T1 | |
OS493_034710-T1 | MOLTING PROTEIN MLT-4 |
OS493_034711-T1 | AMMONIUM TRANSPORTER |
OS493_034712-T1 | AMMONIUM TRANSPORTER MEP2 |
OS493_034713-T1 | |
OS493_034714-T1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
OS493_034715-T1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
OS493_034716-T1 | |
OS493_034717-T1 | RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG |
OS493_034718-T1 | |
OS493_034719-T1 | DUF614 FAMILY PROTEIN-RELATED |
OS493_034720-T1 | DUF614 FAMILY PROTEIN-RELATED |
OS493_034721-T1 | |
OS493_034722-T1 | ARMADILLO REPEAT-CONTAINING PROTEIN 7 |
OS493_034723-T1 | - |
OS493_034724-T1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
OS493_034725-T1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
OS493_034726-T1 | PROTEIN HEATR9 |
OS493_034727-T1 | PROTEIN HEATR9 |
OS493_034728-T1 | ACTIN |
OS493_034729-T1 | ACTIN |
OS493_034730-T1 | ACTIN |
OS493_034731-T1 | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
OS493_034732-T1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
OS493_034733-T1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
OS493_034734-T1 | AEROLYSIN-LIKE PROTEIN-RELATED |
OS493_034735-T1 | |
OS493_034736-T1 | AEROLYSIN-LIKE PROTEIN-RELATED |
OS493_034737-T1 | AEROLYSIN-LIKE PROTEIN-RELATED |