About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_034466-T1
OS493_034467-T1CHONDROITIN SYNTHASE
OS493_034468-T1
OS493_034469-T1UNCHARACTERIZED
OS493_034470-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_034471-T1
OS493_034472-T1
OS493_034473-T1
OS493_034474-T1
OS493_034475-T1REGULATOR OF CHROMOSOME CONDENSATION
OS493_034476-T1
OS493_034479-T1
OS493_034480-T1
OS493_034481-T1RCC1-LIKE G EXCHANGING FACTOR-LIKE PROTEIN
OS493_034482-T1
OS493_034485-T1
OS493_034486-T1SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
OS493_034487-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_034488-T1
OS493_034489-T1
OS493_034490-T1
OS493_034491-T1
OS493_034492-T1
OS493_034493-T1
OS493_034494-T1
OS493_034495-T1RCC1-LIKE G EXCHANGING FACTOR-LIKE PROTEIN
OS493_034496-T1GEO09665P1-RELATED
OS493_034497-T1PBS LYASE HEAT-LIKE PROTEIN
OS493_034498-T1
OS493_034499-T1BASIGIN RELATED
OS493_034500-T1
OS493_034501-T1BTB/POZ DOMAIN-CONTAINING
OS493_034502-T1BASIGIN RELATED
OS493_034503-T1TETRASPANIN
OS493_034504-T1YNEIN REGULATORY COMPLEX SUBUNIT 5
OS493_034505-T1-
OS493_034506-T1DEOXYRIBODIPYRIMIDINE PHOTOLYASE
OS493_034507-T1PROTEIN PHOSPHATASE
OS493_034508-T1
OS493_034509-T1TUBULIN
OS493_034510-T1TUBULIN
OS493_034511-T1NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN
OS493_034512-T1
OS493_034513-T1
OS493_034515-T1NONSYNDROMIC HEARING IMPAIRMENT PROTEIN
OS493_034516-T1EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
OS493_034517-T1EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
OS493_034518-T1EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
OS493_034519-T1PROTEIN TAS
OS493_034520-T1
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