About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_034198-T1
OS493_034199-T1
OS493_034200-T1TRANSMEMBRANE GTPASE FZO1
OS493_034201-T1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2
OS493_034202-T1CENTROSOMAL PROTEIN 2
OS493_034203-T1
OS493_034204-T1PEROXISOME BIOGENESIS FACTOR 2
OS493_034205-T1E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
OS493_034206-T1CENTROSOMAL PROTEIN 2
OS493_034207-T1
OS493_034208-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_034209-T1
OS493_034210-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_034211-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_034212-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_034213-T1
OS493_034214-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_034215-T1LOC100145250 PROTEIN
OS493_034216-T1LOC100145250 PROTEIN
OS493_034217-T1LOC100145250 PROTEIN
OS493_034218-T1
OS493_034219-T1
OS493_034220-T1PROTEIN SIDEKICK
OS493_034221-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_034223-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_034224-T1BASIGIN RELATED
OS493_034225-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_034226-T1BETA-CAROTENE DIOXYGENASE
OS493_034227-T1CONTACTIN 5
OS493_034228-T1BETA-CAROTENE DIOXYGENASE
OS493_034229-T1
OS493_034230-T1AAA DOMAIN-CONTAINING
OS493_034231-T1
OS493_034232-T1G PATCH DOMAIN CONTAINING PROTEIN 2
OS493_034233-T1ARM_2 DOMAIN-CONTAINING PROTEIN
OS493_034234-T1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
OS493_034235-T1KICSTOR COMPLEX PROTEIN KAPTIN
OS493_034236-T1
OS493_034237-T1OTU DOMAIN CONTAINING PROTEIN
OS493_034238-T1
OS493_034239-T1BETA-CAROTENE DIOXYGENASE
OS493_034240-T1-
OS493_034241-T1
OS493_034242-T1DICER-RELATED
OS493_034243-T1DICER-RELATED
OS493_034244-T1
OS493_034245-T1UNCHARACTERIZED
OS493_034246-T1
OS493_034247-T1
OS493_034248-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
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