Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_034044-T1 | AMINOTRANSFERASE |
OS493_034045-T1 | VESICLE PROTEIN SORTING-ASSOCIATED |
OS493_034046-T1 | VESICLE PROTEIN SORTING-ASSOCIATED |
OS493_034047-T1 | SERINE PROTEASE |
OS493_034048-T1 | ZINC FINGER PROTEIN |
OS493_034049-T1 | PLACENTAL PROTEIN 6 |
OS493_034050-T1 | |
OS493_034051-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_034052-T1 | |
OS493_034053-T1 | ANKYRIN REPEAT-CONTAINING |
OS493_034054-T1 | |
OS493_034055-T1 | |
OS493_034056-T1 | |
OS493_034057-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_034058-T1 | DNA2/NAM7 HELICASE FAMILY |
OS493_034059-T1 | UNCHARACTERIZED |
OS493_034060-T1 | CLATHRIN LIGHT CHAIN |
OS493_034061-T1 | BCL-2 RELATED |
OS493_034062-T1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
OS493_034063-T1 | XAA-PRO AMINOPEPTIDASE 3 |
OS493_034064-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
OS493_034065-T1 | SH3 DOMAIN-CONTAINING |
OS493_034066-T1 | WD-REPEAT PROTEIN BING4 |
OS493_034067-T1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
OS493_034068-T1 | |
OS493_034069-T1 | IONOTROPIC GLUTAMATE RECEPTOR |
OS493_034070-T1 | |
OS493_034071-T1 | PROTEIN SCAI |
OS493_034072-T1 | |
OS493_034073-T1 | PROLINE AND SERINE-RICH PROTEIN 1 |
OS493_034074-T1 | VACUOLAR ATP SYNTHASE SUBUNIT G |
OS493_034075-T1 | |
OS493_034076-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_034077-T1 | |
OS493_034078-T1 | |
OS493_034079-T1 | |
OS493_034080-T1 | PROTEIN SCAI |
OS493_034081-T1 | |
OS493_034082-T1 | HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 2 |
OS493_034083-T1 | UNCHARACTERIZED |
OS493_034084-T1 | UNCHARACTERIZED |
OS493_034085-T1 | |
OS493_034086-T1 | |
OS493_034087-T1 | |
OS493_034088-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 |
OS493_034089-T1 | |
OS493_034090-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_034091-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_034092-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_034093-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |