About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_033884-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED
OS493_033885-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED
OS493_033886-T1
OS493_033887-T1WD REPEAT DOMAIN-CONTAINING FAMILY
OS493_033888-T1WD REPEAT DOMAIN-CONTAINING FAMILY
OS493_033889-T12-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED
OS493_033890-T1PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44
OS493_033891-T1GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED
OS493_033892-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47
OS493_033893-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47
OS493_033894-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47
OS493_033895-T1WD REPEAT DOMAIN-CONTAINING FAMILY
OS493_033896-T1
OS493_033897-T1
OS493_033898-T1TYROSINE-TRNA LIGASE
OS493_033900-T1TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER
OS493_033901-T1
OS493_033902-T1
OS493_033903-T1
OS493_033904-T1TROPOMYOSIN
OS493_033905-T1MONOCARBOXYLATE TRANSPORTER
OS493_033906-T1P-LOOP CONTAINING NUCLEOTIDE TRIPHOSPHATE HYDROLASE
OS493_033907-T1
OS493_033908-T1
OS493_033909-T1
OS493_033910-T1EXPRESSED PROTEIN
OS493_033911-T1
OS493_033912-T1NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B
OS493_033913-T1
OS493_033914-T1FLAP ENDONUCLEASE FAMILY MEMBER
OS493_033915-T1FLAP ENDONUCLEASE FAMILY MEMBER
OS493_033916-T1GOLGI MEMBRANE PROTEIN YIP1
OS493_033917-T1
OS493_033918-T1NOP SEVEN ASSOCIATED PROTEIN 1
OS493_033919-T1
OS493_033920-T1
OS493_033921-T1
OS493_033922-T1
OS493_033923-T1MOLTING PROTEIN MLT-4
OS493_033924-T1
OS493_033926-T1SERINE-THREONINE PROTEIN KINASE
OS493_033927-T1TRANSLATION INITIATION FACTOR EIF3-RELATED
OS493_033928-T1PECANEX
OS493_033930-T1PECANEX
OS493_033931-T1
OS493_033933-T1
OS493_033934-T1PECANEX
OS493_033935-T1PECANEX
OS493_033936-T1
OS493_033937-T1
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