Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_033884-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED |
OS493_033885-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED |
OS493_033886-T1 | |
OS493_033887-T1 | WD REPEAT DOMAIN-CONTAINING FAMILY |
OS493_033888-T1 | WD REPEAT DOMAIN-CONTAINING FAMILY |
OS493_033889-T1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
OS493_033890-T1 | PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44 |
OS493_033891-T1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
OS493_033892-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47 |
OS493_033893-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47 |
OS493_033894-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47 |
OS493_033895-T1 | WD REPEAT DOMAIN-CONTAINING FAMILY |
OS493_033896-T1 | |
OS493_033897-T1 | |
OS493_033898-T1 | TYROSINE-TRNA LIGASE |
OS493_033900-T1 | TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER |
OS493_033901-T1 | |
OS493_033902-T1 | |
OS493_033903-T1 | |
OS493_033904-T1 | TROPOMYOSIN |
OS493_033905-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_033906-T1 | P-LOOP CONTAINING NUCLEOTIDE TRIPHOSPHATE HYDROLASE |
OS493_033907-T1 | |
OS493_033908-T1 | |
OS493_033909-T1 | |
OS493_033910-T1 | EXPRESSED PROTEIN |
OS493_033911-T1 | |
OS493_033912-T1 | NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B |
OS493_033913-T1 | |
OS493_033914-T1 | FLAP ENDONUCLEASE FAMILY MEMBER |
OS493_033915-T1 | FLAP ENDONUCLEASE FAMILY MEMBER |
OS493_033916-T1 | GOLGI MEMBRANE PROTEIN YIP1 |
OS493_033917-T1 | |
OS493_033918-T1 | NOP SEVEN ASSOCIATED PROTEIN 1 |
OS493_033919-T1 | |
OS493_033920-T1 | |
OS493_033921-T1 | |
OS493_033922-T1 | |
OS493_033923-T1 | MOLTING PROTEIN MLT-4 |
OS493_033924-T1 | |
OS493_033926-T1 | SERINE-THREONINE PROTEIN KINASE |
OS493_033927-T1 | TRANSLATION INITIATION FACTOR EIF3-RELATED |
OS493_033928-T1 | PECANEX |
OS493_033930-T1 | PECANEX |
OS493_033931-T1 | |
OS493_033933-T1 | |
OS493_033934-T1 | PECANEX |
OS493_033935-T1 | PECANEX |
OS493_033936-T1 | |
OS493_033937-T1 |