Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_033571-T1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
OS493_033572-T1 | |
OS493_033573-T1 | |
OS493_033574-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_033575-T1 | TYROSINE-PROTEIN KINASE |
OS493_033577-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
OS493_033578-T1 | |
OS493_033579-T1 | |
OS493_033580-T1 | |
OS493_033581-T1 | |
OS493_033582-T1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3 |
OS493_033583-T1 | PORCUPINE |
OS493_033584-T1 | |
OS493_033585-T1 | |
OS493_033586-T1 | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED |
OS493_033587-T1 | TYROSINE-PROTEIN KINASE |
OS493_033588-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_033589-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_033590-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_033591-T1 | VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36 |
OS493_033592-T1 | PHOSPHOPANTETHEINE TRANSFERASE |
OS493_033593-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_033594-T1 | SARCOGLYCANS |
OS493_033595-T1 | SARCOGLYCANS |
OS493_033596-T1 | CELL DIVISION PROTEIN KINASE |
OS493_033597-T1 | |
OS493_033598-T1 | PROTEASE M14 CARBOXYPEPTIDASE |
OS493_033599-T1 | |
OS493_033600-T1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_033601-T1 | |
OS493_033602-T1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_033603-T1 | TESTIS-EXPRESSED PROTEIN 26 ISOFORM X3 |
OS493_033604-T1 | TESTIS-EXPRESSED PROTEIN 26 ISOFORM X3 |
OS493_033605-T1 | PROTEIN CBG05606 |
OS493_033606-T1 | PROTEIN CBG05606 |
OS493_033607-T1 | |
OS493_033608-T1 | |
OS493_033609-T1 | L-GULONOLACTONE OXIDASE |
OS493_033610-T1 | L-GULONOLACTONE OXIDASE |
OS493_033611-T1 | |
OS493_033612-T1 | |
OS493_033613-T1 | PROTEIN CBG05606 |
OS493_033614-T1 | PROTEIN CBG05606 |
OS493_033615-T1 | |
OS493_033617-T1 | |
OS493_033618-T1 | |
OS493_033619-T1 | |
OS493_033620-T1 | SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED |
OS493_033621-T1 | SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED |
OS493_033622-T1 | RAS-RELATED PROTEIN RAB |