About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_033351-T1
OS493_033352-T1CHROMO DOMAIN-CONTAINING PROTEIN LHP1
OS493_033353-T1
OS493_033354-T1
OS493_033355-T1WD REPEAT-CONTAINING PROTEIN 55
OS493_033356-T1TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6
OS493_033357-T1TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6
OS493_033358-T1UNCHARACTERIZED
OS493_033359-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_033360-T1
OS493_033361-T1KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG
OS493_033362-T1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
OS493_033363-T1FLAVIN MONOAMINE OXIDASE
OS493_033364-T1FLAVIN MONOAMINE OXIDASE
OS493_033365-T1
OS493_033366-T1
OS493_033367-T1FLAVIN MONOAMINE OXIDASE
OS493_033368-T1FLAVIN MONOAMINE OXIDASE
OS493_033369-T1FLAVIN MONOAMINE OXIDASE
OS493_033370-T1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
OS493_033371-T1ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1
OS493_033372-T1MULTICOPPER OXIDASE-RELATED
OS493_033373-T1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
OS493_033374-T1
OS493_033375-T1SULFOTRANSFERASE SULT
OS493_033376-T1
OS493_033378-T1LEUCOKININ RECEPTOR-RELATED
OS493_033379-T1YNEIN REGULATORY COMPLEX SUBUNIT 5
OS493_033380-T1SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
OS493_033381-T1FI04643P-RELATED
OS493_033382-T1PROTEIN CBR-CLEC-78
OS493_033383-T1
OS493_033384-T1COLLAGEN ALPHA
OS493_033385-T1PROTEIN CBR-CLEC-78
OS493_033386-T1
OS493_033387-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_033388-T1
OS493_033389-T1
OS493_033390-T1OVOCHYMASE-RELATED
OS493_033391-T1
OS493_033392-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_033393-T1SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
OS493_033394-T1PENTRAXIN
OS493_033395-T1OVOCHYMASE-RELATED
OS493_033396-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_033397-T1PROTEIN CBR-CLEC-78
OS493_033398-T1
OS493_033399-T1L-ASPARAGINASE
OS493_033400-T1L-ASPARAGINASE
OS493_033401-T12-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE
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