Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_033351-T1 | |
OS493_033352-T1 | CHROMO DOMAIN-CONTAINING PROTEIN LHP1 |
OS493_033353-T1 | |
OS493_033354-T1 | |
OS493_033355-T1 | WD REPEAT-CONTAINING PROTEIN 55 |
OS493_033356-T1 | TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6 |
OS493_033357-T1 | TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6 |
OS493_033358-T1 | UNCHARACTERIZED |
OS493_033359-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_033360-T1 | |
OS493_033361-T1 | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG |
OS493_033362-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
OS493_033363-T1 | FLAVIN MONOAMINE OXIDASE |
OS493_033364-T1 | FLAVIN MONOAMINE OXIDASE |
OS493_033365-T1 | |
OS493_033366-T1 | |
OS493_033367-T1 | FLAVIN MONOAMINE OXIDASE |
OS493_033368-T1 | FLAVIN MONOAMINE OXIDASE |
OS493_033369-T1 | FLAVIN MONOAMINE OXIDASE |
OS493_033370-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
OS493_033371-T1 | ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1 |
OS493_033372-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_033373-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
OS493_033374-T1 | |
OS493_033375-T1 | SULFOTRANSFERASE SULT |
OS493_033376-T1 | |
OS493_033378-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_033379-T1 | YNEIN REGULATORY COMPLEX SUBUNIT 5 |
OS493_033380-T1 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
OS493_033381-T1 | FI04643P-RELATED |
OS493_033382-T1 | PROTEIN CBR-CLEC-78 |
OS493_033383-T1 | |
OS493_033384-T1 | COLLAGEN ALPHA |
OS493_033385-T1 | PROTEIN CBR-CLEC-78 |
OS493_033386-T1 | |
OS493_033387-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
OS493_033388-T1 | |
OS493_033389-T1 | |
OS493_033390-T1 | OVOCHYMASE-RELATED |
OS493_033391-T1 | |
OS493_033392-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
OS493_033393-T1 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
OS493_033394-T1 | PENTRAXIN |
OS493_033395-T1 | OVOCHYMASE-RELATED |
OS493_033396-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
OS493_033397-T1 | PROTEIN CBR-CLEC-78 |
OS493_033398-T1 | |
OS493_033399-T1 | L-ASPARAGINASE |
OS493_033400-T1 | L-ASPARAGINASE |
OS493_033401-T1 | 2-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE |