Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_033461-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_033462-T1 | UPF0545 PROTEIN C22ORF39 |
OS493_033465-T1 | |
OS493_033466-T1 | FRUCTOSE-BISPHOSPHATE ALDOLASE |
OS493_033467-T1 | D-DOPACHROME DECARBOXYLASE |
OS493_033470-T1 | |
OS493_033471-T1 | |
OS493_033472-T1 | |
OS493_033473-T1 | |
OS493_033474-T1 | |
OS493_033475-T1 | |
OS493_033476-T1 | NUCLEOPHOSMIN |
OS493_033477-T1 | |
OS493_033478-T1 | |
OS493_033479-T1 | RIBOSOMAL PROTEIN S6 KINASE |
OS493_033480-T1 | |
OS493_033481-T1 | |
OS493_033482-T1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
OS493_033483-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_033484-T1 | CADHERIN-87A |
OS493_033485-T1 | |
OS493_033486-T1 | NOTCH LIGAND FAMILY MEMBER |
OS493_033487-T1 | |
OS493_033488-T1 | |
OS493_033489-T1 | MYOSIN LIGHT CHAIN 1, 3 |
OS493_033490-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN, TPR |
OS493_033491-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN, TPR |
OS493_033492-T1 | 5-OXOPROLINASE RELATED |
OS493_033493-T1 | 5-OXOPROLINASE RELATED |
OS493_033494-T1 | CYCLINS |
OS493_033495-T1 | ZGC:162297 |
OS493_033496-T1 | DIABETES AND OBESITY REGULATED, ISOFORM G |
OS493_033499-T1 | |
OS493_033500-T1 | SORTING NEXIN 20, 21 |
OS493_033501-T1 | SORTING NEXIN 20, 21 |
OS493_033502-T1 | UNCHARACTERIZED |
OS493_033503-T1 | |
OS493_033504-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_033505-T1 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED |
OS493_033506-T1 | OVOCHYMASE-RELATED |
OS493_033507-T1 | ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR |
OS493_033508-T1 | CENTROMERE PROTEIN T |
OS493_033509-T1 | |
OS493_033512-T1 | |
OS493_033513-T1 | SCD6 PROTEIN-RELATED |
OS493_033514-T1 | |
OS493_033515-T1 | UNCHARACTERIZED |
OS493_033516-T1 | SORTING NEXIN 20, 21 |
OS493_033517-T1 | |
OS493_033518-T1 |