About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_033461-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
OS493_033462-T1UPF0545 PROTEIN C22ORF39
OS493_033465-T1
OS493_033466-T1FRUCTOSE-BISPHOSPHATE ALDOLASE
OS493_033467-T1D-DOPACHROME DECARBOXYLASE
OS493_033470-T1
OS493_033471-T1
OS493_033472-T1
OS493_033473-T1
OS493_033474-T1
OS493_033475-T1
OS493_033476-T1NUCLEOPHOSMIN
OS493_033477-T1
OS493_033478-T1
OS493_033479-T1RIBOSOMAL PROTEIN S6 KINASE
OS493_033480-T1
OS493_033481-T1
OS493_033482-T1GUANINE NUCLEOTIDE EXCHANGE FACTOR
OS493_033483-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_033484-T1CADHERIN-87A
OS493_033485-T1
OS493_033486-T1NOTCH LIGAND FAMILY MEMBER
OS493_033487-T1
OS493_033488-T1
OS493_033489-T1MYOSIN LIGHT CHAIN 1, 3
OS493_033490-T1TETRATRICOPEPTIDE REPEAT PROTEIN, TPR
OS493_033491-T1TETRATRICOPEPTIDE REPEAT PROTEIN, TPR
OS493_033492-T15-OXOPROLINASE RELATED
OS493_033493-T15-OXOPROLINASE RELATED
OS493_033494-T1CYCLINS
OS493_033495-T1ZGC:162297
OS493_033496-T1DIABETES AND OBESITY REGULATED, ISOFORM G
OS493_033499-T1
OS493_033500-T1SORTING NEXIN 20, 21
OS493_033501-T1SORTING NEXIN 20, 21
OS493_033502-T1UNCHARACTERIZED
OS493_033503-T1
OS493_033504-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_033505-T1TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED
OS493_033506-T1OVOCHYMASE-RELATED
OS493_033507-T1ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR
OS493_033508-T1CENTROMERE PROTEIN T
OS493_033509-T1
OS493_033512-T1
OS493_033513-T1SCD6 PROTEIN-RELATED
OS493_033514-T1
OS493_033515-T1UNCHARACTERIZED
OS493_033516-T1SORTING NEXIN 20, 21
OS493_033517-T1
OS493_033518-T1
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