
Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)
Madrepora pertusa Linnaeus, 1758
1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)
Nova Scotia south to New Jersey. Depth range 39-2775 m
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90 | 1,600/438.6 | 39.4 | 57.37 | 37,484 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
| Gene ID | Description |
|---|---|
| OS493_013448-T1 | - |
| OS493_013449-T1 | - |
| OS493_013450-T1 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P |
| OS493_013451-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| OS493_013453-T1 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
| OS493_013454-T1 | AMELOGENIN |
| OS493_013456-T1 | - |
| OS493_013459-T1 | BATTENIN |
| OS493_013460-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| OS493_013461-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| OS493_013462-T1 | MONOCARBOXYLATE TRANSPORTER |
| OS493_013463-T1 | RFWD3 PROTEIN |
| OS493_013464-T1 | GLUCOSE-6-PHOSPHATE EXCHANGER SLC37A4 |
| OS493_013465-T1 | - |
| OS493_013466-T1 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
| OS493_013467-T1 | FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145 |
| OS493_013468-T1 | SORTING NEXIN |
| OS493_013469-T1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
| OS493_013470-T1 | - |
| OS493_013471-T1 | PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC |