Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_033782-T1 | |
OS493_033783-T1 | CHONDROITIN SYNTHASE |
OS493_033784-T1 | |
OS493_033785-T1 | |
OS493_033786-T1 | LITTLE ELONGATION COMPLEX SUBUNIT 2 |
OS493_033787-T1 | LITTLE ELONGATION COMPLEX SUBUNIT 2 |
OS493_033788-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_033789-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_033790-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_033791-T1 | UNCHARACTERIZED |
OS493_033792-T1 | |
OS493_033793-T1 | |
OS493_033794-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_033795-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_033796-T1 | CUB DOMAIN-CONTAINING PROTEIN |
OS493_033797-T1 | |
OS493_033798-T1 | POLYCYSTIN-1 |
OS493_033799-T1 | |
OS493_033800-T1 | |
OS493_033801-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_033802-T1 | |
OS493_033803-T1 | POTE ANKYRIN DOMAIN |
OS493_033804-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 89 |
OS493_033805-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 89 |
OS493_033806-T1 | ARP2/3 COMPLEX 34 KDA SUBUNIT |
OS493_033807-T1 | SOLUTE CARRIER FAMILY 40 MEMBER |
OS493_033808-T1 | |
OS493_033809-T1 | REGULATOR OF MICROTUBULE DYNAMICS PROTEIN |
OS493_033810-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
OS493_033811-T1 | |
OS493_033812-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
OS493_033813-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
OS493_033814-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
OS493_033815-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
OS493_033816-T1 | |
OS493_033817-T1 | RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 |
OS493_033818-T1 | E3 UBIQUITIN-PROTEIN LIGASE ATL42 |
OS493_033819-T1 | |
OS493_033820-T1 | EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER |
OS493_033821-T1 | TYROSINE-PROTEIN PHOSPHATASE |
OS493_033822-T1 | FIDIPIDINE |
OS493_033823-T1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
OS493_033824-T1 | CARBONYL REDUCTASE 1-RELATED |
OS493_033825-T1 | UPF0565 PROTEIN C2ORF69 |
OS493_033826-T1 | NEUROLIGIN |
OS493_033827-T1 | NEUROLIGIN |
OS493_033828-T1 | |
OS493_033829-T1 | |
OS493_033830-T1 | |
OS493_033831-T1 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D |