Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_033938-T1 | |
OS493_033939-T1 | |
OS493_033940-T1 | |
OS493_033941-T1 | TNFAIP3-INTERACTING PROTEIN COILED COIL FAMILY MEMBER |
OS493_033942-T1 | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED |
OS493_033943-T1 | SPHINGOSINE KINASE |
OS493_033944-T1 | AUTOPHAGY PROTEIN 12 |
OS493_033945-T1 | |
OS493_033946-T1 | |
OS493_033947-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
OS493_033948-T1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS X PROTEIN |
OS493_033949-T1 | UNCHARACTERIZED |
OS493_033950-T1 | LD44762P |
OS493_033951-T1 | FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) |
OS493_033952-T1 | NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED |
OS493_033953-T1 | UBIQUITIN DOMAIN-CONTAINING PROTEIN UBFD1 |
OS493_033954-T1 | |
OS493_033955-T1 | 2-5A-DEPENDENT RIBONUCLEASE |
OS493_033956-T1 | MOLTING PROTEIN MLT-4 |
OS493_033957-T1 | |
OS493_033958-T1 | PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE |
OS493_033959-T1 | SORTING NEXIN-8 |
OS493_033961-T1 | |
OS493_033962-T1 | |
OS493_033963-T1 | ANKYRIN REPEAT FAMILY A |
OS493_033964-T1 | UNCHARACTERIZED |
OS493_033965-T1 | |
OS493_033966-T1 | UNCHARACTERIZED |
OS493_033967-T1 | UNCHARACTERIZED |
OS493_033968-T1 | UNCHARACTERIZED |
OS493_033969-T1 | UNCHARACTERIZED |
OS493_033970-T1 | UNCHARACTERIZED |
OS493_033971-T1 | UNCHARACTERIZED |
OS493_033972-T1 | UNCHARACTERIZED |
OS493_033973-T1 | CENTROMERE PROTEIN M |
OS493_033974-T1 | |
OS493_033975-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
OS493_033976-T1 | |
OS493_033977-T1 | N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE |
OS493_033978-T1 | GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 |
OS493_033979-T1 | HISTONE H2B |
OS493_033980-T1 | GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 |
OS493_033981-T1 | INDOLEAMINE 2,3-DIOXYGENASE |
OS493_033982-T1 | |
OS493_033983-T1 | |
OS493_033984-T1 | |
OS493_033987-T1 | |
OS493_033988-T1 | F-BOX ONLY PROTEIN 7 |
OS493_033989-T1 | F-BOX ONLY PROTEIN 7 |
OS493_033990-T1 | SOLUTE CARRIER FAMILY 35 |