About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_034144-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_034145-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_034147-T1
OS493_034148-T1
OS493_034149-T1UNCHARACTERIZED
OS493_034150-T1
OS493_034151-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_034152-T1
OS493_034153-T1UNCHARACTERIZED
OS493_034154-T1GALACTOSE-3-O-SULFOTRANSFERASE
OS493_034155-T1
OS493_034156-T1UNCHARACTERIZED
OS493_034157-T1UNCHARACTERIZED
OS493_034158-T1GALACTOSE-3-O-SULFOTRANSFERASE
OS493_034159-T1
OS493_034160-T1
OS493_034161-T1NEUROPEPTIDE Y RECEPTOR
OS493_034162-T1B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
OS493_034163-T1
OS493_034164-T14-NITROPHENYLPHOSPHATASE-RELATED
OS493_034165-T1CELL DIVISION CONTROL PROTEIN 6-RELATED
OS493_034166-T1UBIQUITIN-ACTIVATING ENZYME E1
OS493_034168-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_034169-T1DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
OS493_034170-T1MSF1/PX19 RELATED
OS493_034171-T1
OS493_034172-T1PROTEIN SIDEKICK
OS493_034173-T1
OS493_034174-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_034175-T1MULTICOPPER OXIDASE-RELATED
OS493_034176-T1
OS493_034177-T1TRANSMEMBRANE PROTEIN 163
OS493_034178-T1TRANSMEMBRANE PROTEIN 163
OS493_034179-T1GLYCEROL-3-PHOSPHATE DEHYDROGENASE
OS493_034180-T1TRANSMEMBRANE PROTEIN 163
OS493_034181-T1NEURABIN
OS493_034182-T1
OS493_034183-T1
OS493_034186-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_034187-T1G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
OS493_034188-T1SERINE-THREONINE PROTEIN KINASE
OS493_034189-T1
OS493_034190-T1
OS493_034191-T1
OS493_034192-T1SERINE-THREONINE PROTEIN KINASE
OS493_034193-T1
OS493_034194-T1
OS493_034195-T1
OS493_034196-T1
OS493_034197-T1
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