Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_034249-T1 | |
OS493_034250-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_034251-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_034252-T1 | CRUMBS FAMILY MEMBER |
OS493_034253-T1 | PIKACHURIN-LIKE PROTEIN |
OS493_034254-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
OS493_034255-T1 | ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 6 |
OS493_034257-T1 | |
OS493_034258-T1 | |
OS493_034259-T1 | |
OS493_034260-T1 | UNCHARACTERIZED |
OS493_034261-T1 | |
OS493_034262-T1 | |
OS493_034263-T1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
OS493_034264-T1 | |
OS493_034265-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_034266-T1 | |
OS493_034267-T1 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
OS493_034268-T1 | |
OS493_034269-T1 | |
OS493_034270-T1 | |
OS493_034271-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_034272-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_034273-T1 | |
OS493_034274-T1 | OPSIN |
OS493_034276-T1 | |
OS493_034277-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_034278-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_034279-T1 | NUCLEOTIDE KINASE |
OS493_034280-T1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
OS493_034281-T1 | HELIX LOOP HELIX PROTEIN 21-RELATED |
OS493_034282-T1 | |
OS493_034283-T1 | |
OS493_034284-T1 | HELIX LOOP HELIX PROTEIN 21-RELATED |
OS493_034285-T1 | TRANSLATION INITIATION FACTOR EIF-2B |
OS493_034286-T1 | ZGC:174356 |
OS493_034287-T1 | |
OS493_034288-T1 | RETINOL DEHYDROGENASE-RELATED |
OS493_034289-T1 | TOLL-LIKE RECEPTOR |
OS493_034290-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_034292-T1 | |
OS493_034293-T1 | |
OS493_034294-T1 | |
OS493_034295-T1 | LIPOXYGENASE |
OS493_034297-T1 | MARGINAL ZONE B- AND B1-CELL-SPECIFIC PROTEIN |
OS493_034298-T1 | GENERAL VESICULAR TRANSPORT FACTOR P115 |
OS493_034299-T1 | GENERAL VESICULAR TRANSPORT FACTOR P115 |
OS493_034300-T1 | GENERAL VESICULAR TRANSPORT FACTOR P115 |
OS493_034301-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_034302-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |