About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_034249-T1
OS493_034250-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_034251-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_034252-T1CRUMBS FAMILY MEMBER
OS493_034253-T1PIKACHURIN-LIKE PROTEIN
OS493_034254-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
OS493_034255-T1ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 6
OS493_034257-T1
OS493_034258-T1
OS493_034259-T1
OS493_034260-T1UNCHARACTERIZED
OS493_034261-T1
OS493_034262-T1
OS493_034263-T1FORMIN HOMOLOGY 2 FAMILY MEMBER
OS493_034264-T1
OS493_034265-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_034266-T1
OS493_034267-T1EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
OS493_034268-T1
OS493_034269-T1
OS493_034270-T1
OS493_034271-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_034272-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_034273-T1
OS493_034274-T1OPSIN
OS493_034276-T1
OS493_034277-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_034278-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_034279-T1NUCLEOTIDE KINASE
OS493_034280-T1TANDEM PH DOMAIN CONTAINING PROTEIN
OS493_034281-T1HELIX LOOP HELIX PROTEIN 21-RELATED
OS493_034282-T1
OS493_034283-T1
OS493_034284-T1HELIX LOOP HELIX PROTEIN 21-RELATED
OS493_034285-T1TRANSLATION INITIATION FACTOR EIF-2B
OS493_034286-T1ZGC:174356
OS493_034287-T1
OS493_034288-T1RETINOL DEHYDROGENASE-RELATED
OS493_034289-T1TOLL-LIKE RECEPTOR
OS493_034290-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_034292-T1
OS493_034293-T1
OS493_034294-T1
OS493_034295-T1LIPOXYGENASE
OS493_034297-T1MARGINAL ZONE B- AND B1-CELL-SPECIFIC PROTEIN
OS493_034298-T1GENERAL VESICULAR TRANSPORT FACTOR P115
OS493_034299-T1GENERAL VESICULAR TRANSPORT FACTOR P115
OS493_034300-T1GENERAL VESICULAR TRANSPORT FACTOR P115
OS493_034301-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_034302-T1TYROSINE-PROTEIN KINASE RECEPTOR
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