About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_034357-T1
OS493_034358-T1
OS493_034359-T1
OS493_034360-T1
OS493_034361-T1
OS493_034362-T1
OS493_034363-T1
OS493_034364-T1
OS493_034365-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 105
OS493_034366-T1CENTROSOMAL PROTEIN 2
OS493_034367-T1
OS493_034368-T1
OS493_034369-T1
OS493_034370-T1
OS493_034371-T1
OS493_034372-T1
OS493_034374-T1G-PROTEIN COUPLED RECEPTOR
OS493_034375-T1GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1
OS493_034376-T1
OS493_034377-T1PENTRAXIN
OS493_034378-T1
OS493_034379-T1GOLGIN SUBFAMILY A MEMBER-RELATED
OS493_034380-T1
OS493_034381-T1
OS493_034382-T1
OS493_034383-T1
OS493_034384-T1
OS493_034385-T1
OS493_034386-T1
OS493_034387-T1
OS493_034388-T1
OS493_034389-T1
OS493_034390-T1MEMBRANE PROTEIN CH1 RELATED
OS493_034391-T1MEMBRANE PROTEIN CH1 RELATED
OS493_034392-T1
OS493_034393-T1
OS493_034398-T1
OS493_034399-T1ANKYRIN REPEAT FAMILY PROTEIN
OS493_034400-T1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
OS493_034401-T1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
OS493_034402-T1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
OS493_034403-T1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
OS493_034404-T1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
OS493_034405-T1
OS493_034406-T1
OS493_034407-T1G-PROTEIN COUPLED RECEPTOR
OS493_034408-T1
OS493_034409-T1LEUCOKININ RECEPTOR-RELATED
OS493_034410-T1RE74312P
OS493_034411-T1PHOSPHOLIPASE D
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