About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_034521-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_034523-T1IMPORTIN BETA
OS493_034524-T1SOLUTE CARRIER FAMILY 35
OS493_034525-T1
OS493_034526-T1FI19480P1
OS493_034529-T1JUN TRANSCRIPTION FACTOR-RELATED
OS493_034530-T1
OS493_034531-T1FRIZZLED
OS493_034532-T1FRIZZLED
OS493_034533-T1FRIZZLED
OS493_034534-T1
OS493_034535-T1
OS493_034536-T1PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
OS493_034537-T1SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN
OS493_034538-T1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
OS493_034539-T1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
OS493_034540-T1
OS493_034541-T1
OS493_034542-T1MONOCARBOXYLATE TRANSPORTER
OS493_034543-T1SULFIDE:QUINONE OXIDOREDUCTASE
OS493_034544-T1SULFIDE:QUINONE OXIDOREDUCTASE
OS493_034545-T1LONGEVITY ASSURANCE FACTOR 1 LAG1
OS493_034546-T1LONGEVITY ASSURANCE FACTOR 1 LAG1
OS493_034547-T1FOLATE RECEPTOR
OS493_034548-T1MYOSIN REGULATORY LIGHT CHAIN 2
OS493_034549-T1SERINE INCORPORATOR
OS493_034550-T1SERINE INCORPORATOR
OS493_034551-T1INTELECTIN
OS493_034552-T1
OS493_034553-T1
OS493_034554-T1
OS493_034555-T1-
OS493_034556-T1
OS493_034557-T1
OS493_034558-T1
OS493_034559-T1ANKYRIN REPEAT PROTEIN
OS493_034560-T1
OS493_034562-T1
OS493_034563-T1
OS493_034564-T1
OS493_034565-T1
OS493_034566-T1BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
OS493_034567-T1-
OS493_034568-T1
OS493_034569-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_034570-T1NG5
OS493_034571-T1
OS493_034572-T1NG5
OS493_034573-T1NG5
OS493_034574-T1
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