About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_034575-T1
OS493_034576-T1
OS493_034577-T1
OS493_034578-T1SORTING NEXIN
OS493_034579-T1SORTING NEXIN
OS493_034580-T1DNA POLYMERASE SUBUNIT GAMMA-1
OS493_034581-T1DNA POLYMERASE SUBUNIT GAMMA-1
OS493_034582-T1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
OS493_034583-T1ZINC FINGER RNA-BINDING PROTEIN
OS493_034584-T1
OS493_034585-T1
OS493_034586-T1
OS493_034587-T1SORTING NEXIN
OS493_034588-T1
OS493_034589-T1HISTIDINE TRIAD HIT PROTEIN
OS493_034590-T1CULTURE SPECIFIC PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G00130)-RELATED
OS493_034591-T1HISTIDINE TRIAD HIT PROTEIN
OS493_034592-T1
OS493_034593-T1
OS493_034598-T1
OS493_034599-T1MOLTING PROTEIN MLT-4
OS493_034602-T1DNA LIGASE
OS493_034603-T1
OS493_034604-T1ELECTRON TRANSFER FLAVOPROTEIN ALPHA
OS493_034605-T1
OS493_034606-T1HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
OS493_034607-T1ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1
OS493_034608-T1ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1
OS493_034609-T1GLUCOSYLCERAMIDASE
OS493_034610-T1ZGC:101016
OS493_034611-T1SHIELDIN COMPLEX SUBUNIT 2
OS493_034616-T1
OS493_034617-T1
OS493_034618-T1FI19480P1
OS493_034619-T1
OS493_034620-T1FI19480P1
OS493_034621-T1FI19480P1
OS493_034622-T1FI19480P1
OS493_034624-T1FI19480P1
OS493_034625-T1FI19480P1
OS493_034626-T1FI19480P1
OS493_034627-T1FI19480P1
OS493_034628-T1FI19480P1
OS493_034629-T1FI19480P1
OS493_034630-T1
OS493_034631-T1FI19480P1
OS493_034632-T1FI19480P1
OS493_034633-T1FI19480P1
OS493_034634-T1
OS493_034635-T1FI19480P1
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