About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_034985-T1VITELLOGENIN-RELATED
OS493_034986-T1SINGLE STRANDED DNA BINDING PROTEIN
OS493_034987-T1UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10
OS493_034988-T1NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B
OS493_034989-T1
OS493_034990-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_034991-T1
OS493_034992-T1
OS493_034993-T1
OS493_034994-T1
OS493_034995-T1
OS493_034996-T1
OS493_034997-T1
OS493_034998-T1
OS493_034999-T1
OS493_035000-T1
OS493_035001-T1
OS493_035002-T1
OS493_035004-T1
OS493_035005-T1
OS493_035006-T1
OS493_035007-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_035008-T1
OS493_035009-T1
OS493_035010-T1
OS493_035011-T1
OS493_035012-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_035013-T1LIPASE
OS493_035014-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_035015-T1
OS493_035016-T1
OS493_035017-T1
OS493_035018-T1
OS493_035019-T1
OS493_035020-T1LIPOXYGENASE
OS493_035021-T1LIPOXYGENASE
OS493_035022-T1
OS493_035023-T1
OS493_035024-T1
OS493_035025-T1
OS493_035026-T1LIPOXYGENASE
OS493_035027-T1
OS493_035028-T1LIPOXYGENASE
OS493_035030-T1
OS493_035031-T1UNCHARACTERIZED
OS493_035032-T1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
OS493_035033-T1BASIGIN RELATED
OS493_035034-T1-
OS493_035035-T1-
OS493_035037-T1G-PROTEIN-COUPLED RECEPTOR GPCR FAMILY PROTEIN
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