About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_032588-T1
LLU|FUN_032589-T1
LLU|FUN_032590-T1
LLU|FUN_032591-T1
LLU|FUN_032592-T1
LLU|FUN_032593-T1
LLU|FUN_032594-T1
LLU|FUN_032595-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_032601-T1CONSTITUTIVE COACTIVATOR OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA
LLU|FUN_032602-T1COPINE
LLU|FUN_032603-T1COPINE
LLU|FUN_032604-T1ALPHA-1,2-GLUCOSYLTRANSFERASE ALG10
LLU|FUN_032605-T1
LLU|FUN_032606-T1TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT
LLU|FUN_032607-T1
LLU|FUN_032608-T1GEMIN2
LLU|FUN_032609-T1
LLU|FUN_032610-T1
LLU|FUN_032611-T1
LLU|FUN_032612-T1SELENOPROTEIN K
LLU|FUN_032613-T1
LLU|FUN_032614-T1PEPTIDOGLYCAN RECOGNITION PROTEIN
LLU|FUN_032615-T1PEPTIDOGLYCAN RECOGNITION PROTEIN
LLU|FUN_032616-T1
LLU|FUN_032617-T1
LLU|FUN_032618-T1FAT ATYPICAL CADHERIN-RELATED
LLU|FUN_032619-T1NOTCH LIGAND FAMILY MEMBER
LLU|FUN_032620-T1STG PROTEIN
LLU|FUN_032621-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
LLU|FUN_032622-T1
LLU|FUN_032623-T1
LLU|FUN_032624-T1
LLU|FUN_032625-T1
LLU|FUN_032630-T1
LLU|FUN_032631-T1
LLU|FUN_032632-T1ZINC FINGER PROTEIN
LLU|FUN_032633-T1MYD88
LLU|FUN_032634-T1
LLU|FUN_032635-T1MYD88
LLU|FUN_032636-T1HRAS-LIKE SUPPRESSOR - RELATED
LLU|FUN_032637-T1HRAS-LIKE SUPPRESSOR - RELATED
LLU|FUN_032638-T1PX DOMAIN-CONTAINING PROTEIN
LLU|FUN_032639-T1IMMUNOGLOBULIN-BINDING PROTEIN 1
LLU|FUN_032640-T1PROTEIN FMC1 HOMOLOG
LLU|FUN_032641-T1
LLU|FUN_032642-T1ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK
LLU|FUN_032643-T1
LLU|FUN_032644-T1
LLU|FUN_032645-T1PATCHED-RELATED
LLU|FUN_032646-T1PATCHED-RELATED
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