About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_032538-T1
LLU|FUN_032539-T1METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE
LLU|FUN_032540-T1
LLU|FUN_032541-T1
LLU|FUN_032542-T1
LLU|FUN_032543-T1PLASMINOGEN-RELATED
LLU|FUN_032544-T1
LLU|FUN_032545-T1
LLU|FUN_032546-T1
LLU|FUN_032547-T1
LLU|FUN_032548-T1
LLU|FUN_032549-T1
LLU|FUN_032550-T1
LLU|FUN_032551-T1
LLU|FUN_032552-T1
LLU|FUN_032553-T1
LLU|FUN_032554-T1
LLU|FUN_032555-T1
LLU|FUN_032556-T1PROTEIN EVA-1
LLU|FUN_032557-T1
LLU|FUN_032558-T1
LLU|FUN_032559-T1
LLU|FUN_032560-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
LLU|FUN_032561-T1LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
LLU|FUN_032562-T1
LLU|FUN_032563-T1
LLU|FUN_032564-T1RIKEN CDNA 4921504E06 GENE
LLU|FUN_032565-T1RIKEN CDNA 4921504E06 GENE
LLU|FUN_032566-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
LLU|FUN_032567-T1
LLU|FUN_032568-T1
LLU|FUN_032569-T1
LLU|FUN_032570-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
LLU|FUN_032571-T1DED DOMAIN-CONTAINING PROTEIN
LLU|FUN_032572-T1
LLU|FUN_032573-T1
LLU|FUN_032574-T1
LLU|FUN_032575-T1
LLU|FUN_032576-T1
LLU|FUN_032577-T1NUCLEOSIDE DIPHOSPHATE KINASE 7
LLU|FUN_032578-T1BASIC LEUCINE ZIPPER NUCLEAR FACTOR 1 BLZF1 PROTEIN
LLU|FUN_032579-T1
LLU|FUN_032580-T1LIG_CHAN-GLU_BD DOMAIN-CONTAINING PROTEIN
LLU|FUN_032581-T1
LLU|FUN_032582-T1E3 UBIQUITIN-PROTEIN LIGASE KCMF1
LLU|FUN_032583-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
LLU|FUN_032584-T1
LLU|FUN_032585-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
LLU|FUN_032586-T1
LLU|FUN_032587-T1
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