Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_032336-T1 | |
LLU|FUN_032337-T1 | |
LLU|FUN_032338-T1 | SNARE PROTEINS |
LLU|FUN_032339-T1 | DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN |
LLU|FUN_032340-T1 | DNA-DIRECTED RNA POLYMERASE III |
LLU|FUN_032341-T1 | CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL |
LLU|FUN_032342-T1 | |
LLU|FUN_032343-T1 | |
LLU|FUN_032344-T1 | THYMIDYLATE KINASE |
LLU|FUN_032345-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_032346-T1 | |
LLU|FUN_032347-T1 | |
LLU|FUN_032348-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_032349-T1 | |
LLU|FUN_032350-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_032351-T1 | |
LLU|FUN_032352-T1 | |
LLU|FUN_032353-T1 | |
LLU|FUN_032354-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_032355-T1 | |
LLU|FUN_032356-T1 | CALCIPRESSIN |
LLU|FUN_032357-T1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
LLU|FUN_032358-T1 | - |
LLU|FUN_032359-T1 | |
LLU|FUN_032360-T1 | |
LLU|FUN_032361-T1 | ZINC FINGER PROTEIN AEBP2 |
LLU|FUN_032362-T1 | ZINC FINGER PROTEIN AEBP2 |
LLU|FUN_032363-T1 | |
LLU|FUN_032364-T1 | |
LLU|FUN_032365-T1 | TUFTELIN-INTERACTING PROTEIN 11-RELATED |
LLU|FUN_032366-T1 | SMALL VCP/P97-INTERACTING PROTEIN |
LLU|FUN_032367-T1 | NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE |
LLU|FUN_032368-T1 | |
LLU|FUN_032369-T1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
LLU|FUN_032370-T1 | |
LLU|FUN_032371-T1 | BESTROPHIN |
LLU|FUN_032372-T1 | SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN |
LLU|FUN_032373-T1 | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE |
LLU|FUN_032374-T1 | |
LLU|FUN_032375-T1 | |
LLU|FUN_032376-T1 | |
LLU|FUN_032377-T1 | |
LLU|FUN_032378-T1 | |
LLU|FUN_032379-T1 | DNA2/NAM7 HELICASE FAMILY |
LLU|FUN_032380-T1 | |
LLU|FUN_032381-T1 | POLY A POLYMERASE CID PAP -RELATED |
LLU|FUN_032382-T1 | TUMOR SUPPRESSOR P53-BINDING PROTEIN 1 |
LLU|FUN_032383-T1 | 40S RIBOSOMAL PROTEIN S6 |
LLU|FUN_032384-T1 | ANKYRIN REPEAT CONTAINING |
LLU|FUN_032385-T1 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |