About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_032336-T1
LLU|FUN_032337-T1
LLU|FUN_032338-T1SNARE PROTEINS
LLU|FUN_032339-T1DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN
LLU|FUN_032340-T1DNA-DIRECTED RNA POLYMERASE III
LLU|FUN_032341-T1CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL
LLU|FUN_032342-T1
LLU|FUN_032343-T1
LLU|FUN_032344-T1THYMIDYLATE KINASE
LLU|FUN_032345-T1FTP DOMAIN-CONTAINING PROTEIN
LLU|FUN_032346-T1
LLU|FUN_032347-T1
LLU|FUN_032348-T1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
LLU|FUN_032349-T1
LLU|FUN_032350-T1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
LLU|FUN_032351-T1
LLU|FUN_032352-T1
LLU|FUN_032353-T1
LLU|FUN_032354-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
LLU|FUN_032355-T1
LLU|FUN_032356-T1CALCIPRESSIN
LLU|FUN_032357-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
LLU|FUN_032358-T1-
LLU|FUN_032359-T1
LLU|FUN_032360-T1
LLU|FUN_032361-T1ZINC FINGER PROTEIN AEBP2
LLU|FUN_032362-T1ZINC FINGER PROTEIN AEBP2
LLU|FUN_032363-T1
LLU|FUN_032364-T1
LLU|FUN_032365-T1TUFTELIN-INTERACTING PROTEIN 11-RELATED
LLU|FUN_032366-T1SMALL VCP/P97-INTERACTING PROTEIN
LLU|FUN_032367-T1NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE
LLU|FUN_032368-T1
LLU|FUN_032369-T1MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
LLU|FUN_032370-T1
LLU|FUN_032371-T1BESTROPHIN
LLU|FUN_032372-T1SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN
LLU|FUN_032373-T1UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
LLU|FUN_032374-T1
LLU|FUN_032375-T1
LLU|FUN_032376-T1
LLU|FUN_032377-T1
LLU|FUN_032378-T1
LLU|FUN_032379-T1DNA2/NAM7 HELICASE FAMILY
LLU|FUN_032380-T1
LLU|FUN_032381-T1POLY A POLYMERASE CID PAP -RELATED
LLU|FUN_032382-T1TUMOR SUPPRESSOR P53-BINDING PROTEIN 1
LLU|FUN_032383-T140S RIBOSOMAL PROTEIN S6
LLU|FUN_032384-T1ANKYRIN REPEAT CONTAINING
LLU|FUN_032385-T1ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
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