Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_032136-T1 | |
LLU|FUN_032137-T1 | CENTROSOMAL PROTEIN OF 89 KDA |
LLU|FUN_032138-T1 | GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN |
LLU|FUN_032139-T1 | UNCHARACTERIZED |
LLU|FUN_032140-T1 | |
LLU|FUN_032141-T1 | |
LLU|FUN_032142-T1 | |
LLU|FUN_032143-T1 | |
LLU|FUN_032144-T1 | |
LLU|FUN_032145-T1 | |
LLU|FUN_032146-T1 | LIPASE |
LLU|FUN_032147-T1 | |
LLU|FUN_032148-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_032149-T1 | DNA LIGASE |
LLU|FUN_032150-T1 | 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 |
LLU|FUN_032151-T1 | ANKYRIN REPEAT PROTEIN |
LLU|FUN_032152-T1 | TALIN ROD DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_032153-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 23 |
LLU|FUN_032154-T1 | WD REPEAT-CONTAINING PROTEIN 61 |
LLU|FUN_032155-T1 | |
LLU|FUN_032156-T1 | |
LLU|FUN_032157-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
LLU|FUN_032158-T1 | |
LLU|FUN_032159-T1 | |
LLU|FUN_032160-T1 | SERINE/THREONINE-PROTEIN KINASE |
LLU|FUN_032161-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
LLU|FUN_032162-T1 | |
LLU|FUN_032163-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_032164-T1 | |
LLU|FUN_032165-T1 | AGAP005574-PA |
LLU|FUN_032166-T1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
LLU|FUN_032167-T1 | |
LLU|FUN_032168-T1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
LLU|FUN_032169-T1 | |
LLU|FUN_032170-T1 | |
LLU|FUN_032171-T1 | |
LLU|FUN_032172-T1 | GH3 DOMAIN-CONTAINING PROTEIN |
LLU|FUN_032173-T1 | GH3 DOMAIN-CONTAINING PROTEIN |
LLU|FUN_032174-T1 | |
LLU|FUN_032175-T1 | ZINC FINGER PROTEIN |
LLU|FUN_032176-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_032177-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_032178-T1 | |
LLU|FUN_032179-T1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
LLU|FUN_032180-T1 | ABC TRANSPORTER B FAMILY |
LLU|FUN_032181-T1 | |
LLU|FUN_032182-T1 | |
LLU|FUN_032183-T1 | |
LLU|FUN_032184-T1 | |
LLU|FUN_032185-T1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |