Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_65377-0.20 | |
| Bpl_scaf_65377-0.21 | |
| Bpl_scaf_65394-0.4 | |
| Bpl_scaf_65394-0.9 | |
| Bpl_scaf_6540-0.0 | THYROTROPIN-RELEASING HORMONE RECEPTOR |
| Bpl_scaf_6540-0.11 | THYROTROPIN-RELEASING HORMONE RECEPTOR |
| Bpl_scaf_65403-0.16 | |
| Bpl_scaf_65403-0.38 | ANKYRIN REPEAT CONTAINING |
| Bpl_scaf_65403-0.6 | |
| Bpl_scaf_65413-0.10 | |
| Bpl_scaf_65413-0.12 | |
| Bpl_scaf_65413-0.7 | |
| Bpl_scaf_65419-0.0 | |
| Bpl_scaf_65419-0.14 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_65419-0.16 | LITHOSTATHINE |
| Bpl_scaf_65419-0.2 | |
| Bpl_scaf_65419-0.22 | |
| Bpl_scaf_65419-0.24 | |
| Bpl_scaf_65419-0.29 | MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN |
| Bpl_scaf_65419-0.30 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_65427-0.4 | |
| Bpl_scaf_65428-0.0 | APC REGULATOR OF WNT-SIGNALING PATHWAY-RELATED |
| Bpl_scaf_65428-1.3 | REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1 |
| Bpl_scaf_65428-2.3 | |
| Bpl_scaf_65428-2.4 | AMPLIFIED IN BREAST CANCER 2-RELATED |
| Bpl_scaf_65428-3.7 | NUCLEOLAR COMPLEX 2 AND RAD4-RELATED |
| Bpl_scaf_65428-3.8 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
| Bpl_scaf_65428-4.0 | |
| Bpl_scaf_65428-5.3 | NUCLEOLAR COMPLEX 2 AND RAD4-RELATED |
| Bpl_scaf_65428-5.4 | CYTIDINE DEAMINASE |
| Bpl_scaf_65428-6.0 | CYTIDINE DEAMINASE |
| Bpl_scaf_65428-6.10 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Bpl_scaf_65428-6.7 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
| Bpl_scaf_65435-0.0 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_65435-0.13 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_65435-0.14 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_65435-0.15 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_65435-0.8 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_65436-0.4 | DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED |
| Bpl_scaf_65436-1.1 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_65436-2.12 | |
| Bpl_scaf_65436-2.19 | 28S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL |
| Bpl_scaf_65436-2.20 | TGF-BETA INDUCED APOPTOSIS PROTEIN |
| Bpl_scaf_65436-2.21 | DNA-DIRECTED RNA POLYMERASE |
| Bpl_scaf_65436-3.10 | CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN |
| Bpl_scaf_65436-3.6 | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_65436-4.10 | SODIUM/HYDROGEN EXCHANGER |
| Bpl_scaf_65436-4.19 | |
| Bpl_scaf_65436-4.20 | GDAP1, ISOFORM A |
| Bpl_scaf_65436-4.8 | UBIQUITIN-CONJUGATING ENZYME E2 |
