About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_64954-1.6PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_64954-1.8
Bpl_scaf_64954-2.0
Bpl_scaf_64954-2.13HOMEOBOX PROTEIN ARISTALESS
Bpl_scaf_64954-2.4
Bpl_scaf_64954-2.6CEREBELLIN-RELATED
Bpl_scaf_64954-2.7
Bpl_scaf_64954-3.3ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS
Bpl_scaf_64954-4.3GLYCOSYL TRANSFERASE
Bpl_scaf_64954-4.6
Bpl_scaf_64954-5.5TESTIS-EXPRESSED PROTEIN 26 ISOFORM X3
Bpl_scaf_64954-5.6CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR
Bpl_scaf_64954-6.7RHO-GTPASE-ACTIVATING PROTEIN 6 FAMILY MEMBER
Bpl_scaf_64954-7.10LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51
Bpl_scaf_64954-7.11
Bpl_scaf_64954-7.9
Bpl_scaf_64956-0.0HISTONE H1
Bpl_scaf_64957-0.1
Bpl_scaf_64958-0.23MOLTING PROTEIN MLT-4
Bpl_scaf_64961-0.1SOLUTE CARRIER FAMILY 25
Bpl_scaf_64961-2.12
Bpl_scaf_64961-2.2PUTATIVE-RELATED
Bpl_scaf_64961-3.13DESMOGLEIN FAMILY MEMBER
Bpl_scaf_64961-3.14TYROSINE-PROTEIN KINASE RECEPTOR
Bpl_scaf_64963-0.0
Bpl_scaf_64963-0.5ZINC FINGER PROTEIN
Bpl_scaf_64965-0.0UNCHARACTERIZED
Bpl_scaf_64966-0.4
Bpl_scaf_64972-0.4DYNEIN REGULATORY COMPLEX SUBUNIT 4
Bpl_scaf_64974-0.0LITHOSTATHINE
Bpl_scaf_64977-0.13ROLLING PEBBLES, ISOFORM B
Bpl_scaf_64978-0.7
Bpl_scaf_64980-0.5HELICASE WITH DEATH DOMAIN-RELATED
Bpl_scaf_64982-0.3METALLOPEPTIDASE M28 FAMILY MEMBER
Bpl_scaf_64983-0.3
Bpl_scaf_64983-0.7
Bpl_scaf_64984-0.4
Bpl_scaf_64985-0.0
Bpl_scaf_64985-0.2ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Bpl_scaf_64985-0.4
Bpl_scaf_64988-0.14PUTATIVE-RELATED
Bpl_scaf_64988-1.14
Bpl_scaf_64988-1.20ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Bpl_scaf_64988-1.5RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Bpl_scaf_64988-2.3BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_64988-2.8
Bpl_scaf_64988-3.1
Bpl_scaf_64988-3.19METHYLTRANSFERASE-LIKE PROTEIN 24
Bpl_scaf_64988-3.2
Bpl_scaf_64988-3.20ENDONUCLEASE-RELATED
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