About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_64647-0.10PROTEIN TORNADO 1
Bpl_scaf_64656-0.7MONOCARBOXYLATE TRANSPORTER
Bpl_scaf_6466-0.12SPINDLIN
Bpl_scaf_6466-0.5OLIGORIBONUCLEASE, MITOCHONDRIAL
Bpl_scaf_6466-0.8
Bpl_scaf_6466-0.9
Bpl_scaf_64664-0.15THAP DOMAIN PROTEIN
Bpl_scaf_64664-0.17LD33804P
Bpl_scaf_64664-0.21
Bpl_scaf_64664-0.23
Bpl_scaf_64664-0.24HEAT SHOCK 70 KDA PROTEIN 14
Bpl_scaf_64674-0.13
Bpl_scaf_64674-0.15OS10G0105400 PROTEIN
Bpl_scaf_64687-0.6G PATCH DOMAIN CONTAINING PROTEIN 3
Bpl_scaf_64687-0.9BONUS, ISOFORM C-RELATED
Bpl_scaf_64695-0.5DEOXYRIBONUCLEASE TATDN2-RELATED
Bpl_scaf_64706-0.15HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER
Bpl_scaf_64706-0.16CYSTEINE PROTEASE FAMILY C1-RELATED
Bpl_scaf_64706-0.18HIGH MOBILITY GROUP B PROTEIN 12-RELATED
Bpl_scaf_64706-0.23BONUS, ISOFORM C-RELATED
Bpl_scaf_64707-0.0
Bpl_scaf_64707-0.13
Bpl_scaf_64707-0.15
Bpl_scaf_64707-1.0SEX PEPTIDE RECEPTOR
Bpl_scaf_64707-1.1
Bpl_scaf_64707-3.1
Bpl_scaf_64707-3.6
Bpl_scaf_64707-3.7
Bpl_scaf_64707-5.11CALCIUM-TRANSPORTING ATPASE
Bpl_scaf_64707-6.19TYROSINE-PROTEIN KINASE
Bpl_scaf_64727-0.10C-TERMINAL-BINDING PROTEIN
Bpl_scaf_64727-0.11TESTIS-EXPRESSED PROTEIN 36
Bpl_scaf_64727-0.26
Bpl_scaf_64727-0.9MACROPHAGE ERYTHROBLAST ATTACHER-RELATED
Bpl_scaf_64741-0.12FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_64741-0.13
Bpl_scaf_64745-0.21SCAVENGER RECEPTOR CLASS F
Bpl_scaf_64745-0.22PROTEIN CBG17840
Bpl_scaf_64745-0.23
Bpl_scaf_64745-0.24SCAVENGER RECEPTOR CLASS F
Bpl_scaf_64745-0.25
Bpl_scaf_64754-0.19MUCIN 4-RELATED
Bpl_scaf_64754-0.20MUCIN 4-RELATED
Bpl_scaf_64754-0.22MUCIN 4-RELATED
Bpl_scaf_64754-0.23NEUROTRANSMITTER GATED ION CHANNEL
Bpl_scaf_6476-0.2
Bpl_scaf_64764-0.11
Bpl_scaf_64764-0.17I-KAPPA-B-LIKE PROTEIN IKBL
Bpl_scaf_64764-0.19
Bpl_scaf_64764-0.20SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1
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