Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_64137-1.0 | |
| Bpl_scaf_64138-0.13 | SOLUTE CARRIER FAMILY 13 MEMBER |
| Bpl_scaf_64138-1.1 | |
| Bpl_scaf_64138-1.4 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_64138-3.6 | RIM BINDING PROTEIN-RELATED |
| Bpl_scaf_64138-4.35 | PROTEIN FAM207A |
| Bpl_scaf_64138-4.7 | COMPLEMENT COMPONENT 1 |
| Bpl_scaf_64138-4.9 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_64138-5.3 | SOLUTE CARRIER FAMILY 5 |
| Bpl_scaf_64138-6.2 | POTASSIUM CHANNEL, SUBFAMILY K |
| Bpl_scaf_64138-7.14 | |
| Bpl_scaf_64138-7.15 | |
| Bpl_scaf_64138-7.22 | PLEXIN |
| Bpl_scaf_64138-8.14 | |
| Bpl_scaf_64138-8.17 | |
| Bpl_scaf_64138-8.18 | |
| Bpl_scaf_64142-0.9 | COLLAGEN ALPHA |
| Bpl_scaf_64146-0.1 | |
| Bpl_scaf_64146-0.3 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Bpl_scaf_64146-1.3 | |
| Bpl_scaf_64152-0.0 | |
| Bpl_scaf_64161-0.3 | PROTEIN TAG-278-RELATED |
| Bpl_scaf_64161-1.10 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
| Bpl_scaf_64161-1.18 | CENTROSOMAL PROTEIN 2 |
| Bpl_scaf_64161-1.8 | CEREBELLIN-RELATED |
| Bpl_scaf_64169-0.2 | SIDESTEP PROTEIN |
| Bpl_scaf_6417-0.0 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_64176-0.0 | |
| Bpl_scaf_64176-0.3 | MANNAN POLYMERASE II |
| Bpl_scaf_64176-0.8 | PLASMINOGEN-RELATED |
| Bpl_scaf_64176-1.5 | 42-9-9 PROTEIN-RELATED |
| Bpl_scaf_64176-1.6 | SOLUTE CARRIER FAMILY 13 MEMBER |
| Bpl_scaf_64176-2.0 | BOLA-LIKE PROTEIN-RELATED |
| Bpl_scaf_64176-2.17 | SELENOPROTEIN O |
| Bpl_scaf_64176-2.20 | MYOSIN |
| Bpl_scaf_64176-2.21 | TWO PORE CALCIUM CHANNEL PROTEIN 1 |
| Bpl_scaf_64176-2.22 | IQ DOMAIN-CONTAINING PROTEIN D |
| Bpl_scaf_64183-0.10 | F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED |
| Bpl_scaf_64183-1.0 | |
| Bpl_scaf_64183-1.1 | |
| Bpl_scaf_64183-1.10 | |
| Bpl_scaf_64183-1.11 | |
| Bpl_scaf_64183-2.5 | PEROXISOMAL MEMBRANE PROTEIN 4 |
| Bpl_scaf_64184-0.3 | |
| Bpl_scaf_64193-0.8 | PRE-MRNA CLEAVAGE COMPLEX II |
| Bpl_scaf_64193-1.5 | E3 UBIQUITIN-PROTEIN LIGASE ATL42 |
| Bpl_scaf_64193-1.6 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| Bpl_scaf_64193-2.10 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_64193-2.12 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| Bpl_scaf_64193-2.17 | SH3 DOMAIN-CONTAINING |
