Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_64005-3.7 | |
| Bpl_scaf_64005-4.12 | NUCLEAR HORMONE RECEPTOR |
| Bpl_scaf_64005-4.7 | |
| Bpl_scaf_64005-5.15 | MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED |
| Bpl_scaf_64005-5.4 | THAP DOMAIN PROTEIN |
| Bpl_scaf_64005-7.3 | ENDONUCLEASE-RELATED |
| Bpl_scaf_64005-8.7 | NME/NM23 FAMILY MEMBER 8 |
| Bpl_scaf_64005-8.8 | NUCLEOSIDE DIPHOSPHATE KINASE |
| Bpl_scaf_64005-9.4 | TUMOR NECROSIS FACTOR RECEPTOR |
| Bpl_scaf_64008-0.11 | OXYSTEROL-BINDING PROTEIN-RELATED |
| Bpl_scaf_64008-0.13 | |
| Bpl_scaf_64008-0.4 | OXYSTEROL-BINDING PROTEIN-RELATED |
| Bpl_scaf_64008-0.9 | |
| Bpl_scaf_6401-0.1 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_64017-0.5 | P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE |
| Bpl_scaf_64017-0.6 | |
| Bpl_scaf_64019-0.0 | |
| Bpl_scaf_64019-0.1 | |
| Bpl_scaf_64019-0.2 | |
| Bpl_scaf_64019-0.6 | EXPRESSED PROTEIN |
| Bpl_scaf_64028-0.0 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| Bpl_scaf_64028-0.4 | |
| Bpl_scaf_64029-0.6 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_64029-1.12 | INHIBITOR OF APOPTOSIS |
| Bpl_scaf_64029-1.15 | CEREBELLIN-RELATED |
| Bpl_scaf_64029-1.20 | INHIBITOR OF APOPTOSIS |
| Bpl_scaf_64029-1.5 | |
| Bpl_scaf_64029-2.10 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| Bpl_scaf_64029-2.11 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| Bpl_scaf_64029-2.12 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Bpl_scaf_64029-2.9 | ZINC FINGER C4H2 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_64029-3.14 | RAS-LIKE FAMILY MEMBER 11 |
| Bpl_scaf_64029-3.9 | EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 |
| Bpl_scaf_64029-4.18 | |
| Bpl_scaf_64029-4.19 | PHOSPHATE-BINDING PROTEIN PSTS |
| Bpl_scaf_64029-4.20 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_64029-4.21 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_64029-4.6 | |
| Bpl_scaf_64029-5.6 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
| Bpl_scaf_64029-6.15 | PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED |
| Bpl_scaf_64029-6.4 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Bpl_scaf_64034-0.12 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_64034-0.18 | NF-KAPPA-B ESSENTIAL MODULATOR |
| Bpl_scaf_64034-0.20 | UNCHARACTERIZED |
| Bpl_scaf_64034-0.44 | ANKYRIN REPEAT FAMILY PROTEIN |
| Bpl_scaf_64034-0.47 | MOLTING PROTEIN MLT-4 |
| Bpl_scaf_64048-0.0 | |
| Bpl_scaf_64048-0.4 | |
| Bpl_scaf_64063-0.1 | |
| Bpl_scaf_64063-0.9 |
