Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_63743-4.13 | |
| Bpl_scaf_63743-4.2 | |
| Bpl_scaf_63789-0.0 | ZGC:195170 |
| Bpl_scaf_63789-0.2 | EXPRESSED PROTEIN |
| Bpl_scaf_63797-0.0 | |
| Bpl_scaf_63797-0.4 | |
| Bpl_scaf_63823-0.1 | |
| Bpl_scaf_6383-0.0 | |
| Bpl_scaf_6383-0.10 | |
| Bpl_scaf_6383-0.13 | |
| Bpl_scaf_6383-0.14 | |
| Bpl_scaf_6384-0.11 | VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT-ASSOCIATED REGULATORY PROTEIN |
| Bpl_scaf_6384-0.7 | LEUCINE RICH REPEAT FAMILY PROTEIN |
| Bpl_scaf_6384-1.10 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
| Bpl_scaf_6384-1.17 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
| Bpl_scaf_6384-1.8 | SNF2/RAD54 FAMILY MEMBER |
| Bpl_scaf_6384-2.13 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
| Bpl_scaf_6384-2.5 | WD-REPEAT PROTEIN 18 |
| Bpl_scaf_6384-3.3 | IONOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_6384-4.4 | IONOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_6384-4.6 | IONOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_6384-4.8 | |
| Bpl_scaf_6384-5.13 | |
| Bpl_scaf_6384-5.17 | |
| Bpl_scaf_6384-5.8 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Bpl_scaf_63848-0.2 | |
| Bpl_scaf_6385-0.4 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED |
| Bpl_scaf_6385-0.5 | |
| Bpl_scaf_63854-0.4 | FMRFAMIDE RECEPTOR-RELATED |
| Bpl_scaf_63854-0.6 | |
| Bpl_scaf_63854-1.1 | FMRFAMIDE RECEPTOR-RELATED |
| Bpl_scaf_63854-10.0 | |
| Bpl_scaf_63854-10.10 | CALPAIN |
| Bpl_scaf_63854-10.7 | BEN DOMAIN-CONTAINING PROTEIN 3 |
| Bpl_scaf_63854-10.8 | HEDGEHOG-INTERACTING PROTEIN |
| Bpl_scaf_63854-10.9 | HEDGEHOG-INTERACTING PROTEIN |
| Bpl_scaf_63854-11.4 | UBIQUITIN-ACTIVATING ENZYME E1 |
| Bpl_scaf_63854-11.5 | SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN |
| Bpl_scaf_63854-12.14 | |
| Bpl_scaf_63854-12.27 | TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 1 |
| Bpl_scaf_63854-12.28 | FAT ATYPICAL CADHERIN-RELATED |
| Bpl_scaf_63854-12.50 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| Bpl_scaf_63854-12.51 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| Bpl_scaf_63854-12.52 | UPF0696 PROTEIN C11ORF68 |
| Bpl_scaf_63854-12.55 | HOMOLOC-13 |
| Bpl_scaf_63854-12.57 | FAT ATYPICAL CADHERIN-RELATED |
| Bpl_scaf_63854-12.58 | |
| Bpl_scaf_63854-3.5 | TUMOR NECROSIS FACTOR FAMILY MEMBER |
| Bpl_scaf_63854-3.6 | |
| Bpl_scaf_63854-4.10 | NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 |
