About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_63360-18.10REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_63360-18.11
Bpl_scaf_63360-18.3
Bpl_scaf_63360-2.10PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
Bpl_scaf_63360-20.2
Bpl_scaf_63360-20.3DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED
Bpl_scaf_63360-21.22
Bpl_scaf_63360-21.2360S RIBOSOMAL PROTEIN L22
Bpl_scaf_63360-21.24ALKALINE PHOSPHATASE
Bpl_scaf_63360-21.3
Bpl_scaf_63360-21.5ALKALINE PHOSPHATASE
Bpl_scaf_63360-21.7GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
Bpl_scaf_63360-3.5WAP FOUR-DISULFIDE CORE DOMAIN PROTEIN 1
Bpl_scaf_63360-3.8CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Bpl_scaf_63360-3.9SULFATASE MODIFYING FACTOR 1, 2
Bpl_scaf_63360-4.6
Bpl_scaf_63360-7.0
Bpl_scaf_63360-7.2G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_63360-9.10
Bpl_scaf_63360-9.21
Bpl_scaf_63360-9.26
Bpl_scaf_63360-9.27ALLANTOINASE
Bpl_scaf_63360-9.30MYOTROPHIN
Bpl_scaf_63360-9.5
Bpl_scaf_63374-0.5
Bpl_scaf_63384-0.6
Bpl_scaf_63384-0.7
Bpl_scaf_63384-1.0SI:CH211-59O9.10
Bpl_scaf_63384-1.3ADP-RIBOSYLGLYCOHYDROLASE
Bpl_scaf_63384-1.8TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN15
Bpl_scaf_63384-2.7UNCHARACTERIZED
Bpl_scaf_63384-3.17REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_63384-3.3CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Bpl_scaf_63384-4.5PHD-TYPE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_63384-4.9SACCHAROPINE DEHYDROGENASE
Bpl_scaf_63384-5.3PROTEIN STAR
Bpl_scaf_63384-6.11
Bpl_scaf_63384-6.12HIGH-AFFINITY CHOLINE TRANSPORTER 1
Bpl_scaf_63390-0.7ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Bpl_scaf_63390-0.8SCAVENGER RECEPTOR CLASS F
Bpl_scaf_634-0.0
Bpl_scaf_634-0.3TUMOR NECROSIS FACTOR FAMILY MEMBER
Bpl_scaf_634-1.3CYTOSOLIC PHOSPHOLIPASE A2
Bpl_scaf_634-2.12
Bpl_scaf_634-2.13MONOCARBOXYLATE TRANSPORTER
Bpl_scaf_634-2.5
Bpl_scaf_63405-0.0
Bpl_scaf_63405-0.2
Bpl_scaf_63413-0.4BONUS, ISOFORM C-RELATED
Bpl_scaf_63420-0.17
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