Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_63548-1.10 | |
| Bpl_scaf_63548-1.13 | POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4 |
| Bpl_scaf_63548-1.25 | RNA BINDING PROTEIN |
| Bpl_scaf_63548-1.26 | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A |
| Bpl_scaf_63548-1.6 | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A |
| Bpl_scaf_63558-0.10 | CONTACTIN 5 |
| Bpl_scaf_63558-0.11 | CYTOCHROME P450 FAMILY 3 |
| Bpl_scaf_63558-1.18 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| Bpl_scaf_63558-1.19 | |
| Bpl_scaf_63558-1.21 | ZINC FINGER PROTEIN 200 |
| Bpl_scaf_63558-1.23 | LEUCYL-TRNA SYNTHETASE |
| Bpl_scaf_6356-0.8 | NEPHRIN |
| Bpl_scaf_63561-0.0 | ATP-DEPENDENT DNA HELICASE |
| Bpl_scaf_63568-0.1 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
| Bpl_scaf_63568-0.10 | L-GULONOLACTONE OXIDASE |
| Bpl_scaf_63568-1.27 | ATPASES OF THE PP SUPERFAMILY-RELATED |
| Bpl_scaf_63568-1.30 | |
| Bpl_scaf_63568-1.4 | |
| Bpl_scaf_63576-0.5 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Bpl_scaf_63576-1.9 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Bpl_scaf_63576-2.15 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Bpl_scaf_63577-0.0 | CEREBELLIN-RELATED |
| Bpl_scaf_63580-0.0 | TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_63581-0.1 | |
| Bpl_scaf_63585-0.4 | |
| Bpl_scaf_63585-1.5 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| Bpl_scaf_63587-0.5 | |
| Bpl_scaf_63589-0.0 | |
| Bpl_scaf_63590-0.2 | RAS-RELATED PROTEIN RAB |
| Bpl_scaf_63590-0.5 | |
| Bpl_scaf_63590-1.2 | GLYCOSYL HYDROLASE-RELATED |
| Bpl_scaf_63590-2.0 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_63590-2.16 | |
| Bpl_scaf_63590-2.2 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_63590-2.20 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_63590-2.27 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_63590-2.8 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_63596-0.0 | |
| Bpl_scaf_63596-0.4 | DNA REPAIR-SCAFFOLDING PROTEIN SPIDR |
| Bpl_scaf_63596-1.4 | ENHANCER OF MRNA-DECAPPING PROTEIN 4 |
| Bpl_scaf_63596-2.11 | METALLOPEPTIDASE M28 FAMILY MEMBER |
| Bpl_scaf_63596-2.13 | UNCHARACTERIZED |
| Bpl_scaf_63596-2.14 | |
| Bpl_scaf_63601-0.2 | N-ACETYLTRANSFERASE-RELATED |
| Bpl_scaf_63605-0.0 | |
| Bpl_scaf_6361-0.0 | |
| Bpl_scaf_63614-0.0 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_63616-0.2 | EPH RECEPTOR A5 |
| Bpl_scaf_63617-0.13 | |
| Bpl_scaf_63617-0.17 |
