About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_63009-0.0
Bpl_scaf_63013-0.5
Bpl_scaf_63013-1.17KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Bpl_scaf_63013-1.18
Bpl_scaf_63013-1.19
Bpl_scaf_63013-2.7RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Bpl_scaf_63064-0.11
Bpl_scaf_63064-0.123'-5' EXONUCLEASE ERI1-RELATED
Bpl_scaf_63065-0.1
Bpl_scaf_63066-0.8LIPOYL SYNTHASE
Bpl_scaf_63067-0.2VACUOLAR PROTEIN SORTING VPS41
Bpl_scaf_63069-0.3
Bpl_scaf_63069-1.19
Bpl_scaf_63069-1.25
Bpl_scaf_63069-1.26
Bpl_scaf_63069-1.6
Bpl_scaf_63069-1.8
Bpl_scaf_63069-2.0
Bpl_scaf_63069-2.1PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_63069-2.3
Bpl_scaf_63069-2.6
Bpl_scaf_63076-0.1THROMBOSPONDIN-TYPE LAMININ G DOMAIN AND EAR REPEAT-CONTAINING
Bpl_scaf_63078-0.0
Bpl_scaf_63080-0.2DOPAMINE BETA HYDROXYLASE RELATED
Bpl_scaf_63080-0.4LD33804P
Bpl_scaf_63080-0.5
Bpl_scaf_63080-1.0DOPAMINE BETA HYDROXYLASE RELATED
Bpl_scaf_63080-1.5DOPAMINE BETA HYDROXYLASE RELATED
Bpl_scaf_63080-2.3G9A, ISOFORM B
Bpl_scaf_63084-0.0
Bpl_scaf_63088-0.0BTB/POZ DOMAIN-CONTAINING
Bpl_scaf_63090-0.4LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Bpl_scaf_63091-0.0APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Bpl_scaf_63091-0.10TUMOR NECROSIS FACTOR FAMILY MEMBER
Bpl_scaf_63091-1.3PROPERDIN
Bpl_scaf_63091-1.4CYCLIN
Bpl_scaf_63091-2.7
Bpl_scaf_63091-3.15MONOCARBOXYLATE TRANSPORTER
Bpl_scaf_63091-3.17
Bpl_scaf_63091-3.18
Bpl_scaf_63095-0.15PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_63095-0.6PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_63096-1.0
Bpl_scaf_63096-2.2
Bpl_scaf_63096-3.11
Bpl_scaf_63096-3.14FMRFAMIDE RECEPTOR-RELATED
Bpl_scaf_63096-3.17PHOSPHOENOLPYRUVATE CARBOXYKINASE
Bpl_scaf_63099-0.0
Bpl_scaf_63099-0.5
Bpl_scaf_63099-0.7
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