About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_62822-0.2
Bpl_scaf_62822-0.20RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_62822-0.21RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_62829-0.10TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED
Bpl_scaf_62829-0.21CEREBELLIN-RELATED
Bpl_scaf_62829-0.22NUCLEAR PORE COMPLEX PROTEIN NUP155
Bpl_scaf_62839-0.10COLLAGEN ALPHA
Bpl_scaf_62839-0.19COLLAGEN ALPHA
Bpl_scaf_62839-0.22COLLAGEN ALPHA
Bpl_scaf_62839-0.23COLLAGEN ALPHA
Bpl_scaf_62839-0.24COLLAGEN ALPHA
Bpl_scaf_62839-0.4
Bpl_scaf_62839-0.6
Bpl_scaf_62839-0.7COLLAGEN ALPHA
Bpl_scaf_62840-1.10TUBULIN POLYGLUTAMYLASE
Bpl_scaf_62840-1.14CARNOSINE SYNTHASE 1
Bpl_scaf_62840-1.9
Bpl_scaf_62840-2.7SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4
Bpl_scaf_62840-2.8HAMARTIN
Bpl_scaf_62840-3.11UPF0428 PROTEIN CXORF56
Bpl_scaf_62840-3.7
Bpl_scaf_62840-4.6CELL DIVISION PROTEIN KINASE
Bpl_scaf_62840-5.0
Bpl_scaf_62840-6.10BETA-CAROTENE DIOXYGENASE
Bpl_scaf_62840-6.2
Bpl_scaf_62842-0.4
Bpl_scaf_62852-0.1ZGC:195170
Bpl_scaf_62852-0.6
Bpl_scaf_62864-0.10RHO FAMILY GTPASE
Bpl_scaf_62878-0.15DUF3504 DOMAIN-CONTAINING PROTEIN
Bpl_scaf_62878-0.21ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6
Bpl_scaf_62878-0.23PROTEIN, PUTATIVE-RELATED
Bpl_scaf_62878-0.26SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Bpl_scaf_62878-0.36
Bpl_scaf_6288-0.6
Bpl_scaf_62887-0.4NON-HOMOLOGOUS END-JOINING FACTOR 1
Bpl_scaf_62888-0.3MODULATOR OF FTSH PROTEASE HFLC
Bpl_scaf_62888-2.0
Bpl_scaf_62888-2.14CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 65
Bpl_scaf_62888-2.21
Bpl_scaf_62888-3.11
Bpl_scaf_62888-3.7
Bpl_scaf_62888-4.6WD REPEAT-CONTAINING PROTEIN 97
Bpl_scaf_62888-5.0-
Bpl_scaf_62888-5.20
Bpl_scaf_62888-5.21PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
Bpl_scaf_62888-7.14MYOTROPHIN
Bpl_scaf_62888-7.18PERFORIN-LIKE PROTEIN 1
Bpl_scaf_62888-7.19
Bpl_scaf_62893-1.5UFM1-SPECIFIC PROTEASE 2
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