Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_62418-6.26 | |
| Bpl_scaf_62418-6.28 | PHENYLALANYL-TRNA SYNTHETASE |
| Bpl_scaf_62418-6.29 | |
| Bpl_scaf_62418-6.3 | |
| Bpl_scaf_62418-6.4 | |
| Bpl_scaf_62418-6.5 | |
| Bpl_scaf_62418-6.9 | |
| Bpl_scaf_62420-0.12 | |
| Bpl_scaf_62427-0.11 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_62427-0.12 | SIGNAL-TRANSDUCING ADAPTOR PROTEIN-RELATED |
| Bpl_scaf_62427-0.7 | |
| Bpl_scaf_62428-1.6 | APPLE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_62428-1.7 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Bpl_scaf_62428-2.10 | RNA-BINDING PROTEIN 8A |
| Bpl_scaf_62428-2.13 | HCLS1-ASSOCIATED PROTEIN X-1 |
| Bpl_scaf_62428-2.15 | PROTEIN CBG07384 |
| Bpl_scaf_62428-2.16 | SERUM RESPONSE FACTOR-BINDING |
| Bpl_scaf_62428-3.2 | PUTATIVE-RELATED |
| Bpl_scaf_62428-3.3 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 |
| Bpl_scaf_62428-4.4 | TESTIS-EXPRESSED PROTEIN 45 |
| Bpl_scaf_62428-4.6 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Bpl_scaf_62428-5.5 | BRAKELESS PROTEIN |
| Bpl_scaf_62428-5.6 | C1ORF189 |
| Bpl_scaf_62428-5.9 | MICROTUBULE-ASSOCIATED PROTEIN |
| Bpl_scaf_62428-6.15 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| Bpl_scaf_62428-6.37 | PR DOMAIN ZINC FINGER PROTEIN |
| Bpl_scaf_62428-6.38 | SEMAPHORIN |
| Bpl_scaf_62428-6.4 | SEMAPHORIN |
| Bpl_scaf_62439-0.15 | |
| Bpl_scaf_62439-0.17 | EH DOMAIN |
| Bpl_scaf_62439-0.18 | EH DOMAIN |
| Bpl_scaf_62439-0.31 | WD40 REPEAT FAMILY |
| Bpl_scaf_62439-0.7 | |
| Bpl_scaf_6244-0.7 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
| Bpl_scaf_6244-0.8 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
| Bpl_scaf_62441-0.7 | HMG-BOX TRANSCRIPTION FACTOR BBX |
| Bpl_scaf_62441-1.10 | NEPHRIN |
| Bpl_scaf_62441-1.6 | |
| Bpl_scaf_62441-1.8 | |
| Bpl_scaf_62441-10.2 | |
| Bpl_scaf_62441-11.5 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
| Bpl_scaf_62441-11.7 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
| Bpl_scaf_62441-12.11 | MALONYL-COA ACP TRANSACYLASE, ACP-BINDING |
| Bpl_scaf_62441-12.22 | |
| Bpl_scaf_62441-12.6 | 39S RIBOSOMAL PROTEIN L36, MITOCHONDRIAL |
| Bpl_scaf_62441-12.7 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Bpl_scaf_62441-13.10 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Bpl_scaf_62441-13.11 | |
| Bpl_scaf_62441-13.24 | EGALITARIAN, ISOFORM B |
| Bpl_scaf_62441-14.18 | KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED |
