Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_62525-4.2 | |
| Bpl_scaf_62525-4.4 | G-PROTEIN COUPLED RECEPTOR TKR-1-RELATED |
| Bpl_scaf_62525-4.7 | G-PROTEIN COUPLED RECEPTOR TKR-1-RELATED |
| Bpl_scaf_62525-5.0 | |
| Bpl_scaf_62525-5.8 | |
| Bpl_scaf_62525-9.4 | |
| Bpl_scaf_62525-9.7 | |
| Bpl_scaf_62562-0.0 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_62562-0.1 | SODIUM/CALCIUM EXCHANGER |
| Bpl_scaf_62562-0.16 | HISTIDINE-RICH GLYCOPROTEIN |
| Bpl_scaf_62562-0.2 | SODIUM/CALCIUM EXCHANGER |
| Bpl_scaf_62564-0.13 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Bpl_scaf_62564-0.16 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| Bpl_scaf_62564-0.19 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| Bpl_scaf_62565-0.12 | MUSKELIN |
| Bpl_scaf_62565-0.15 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_62565-0.36 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_62565-0.37 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_62567-0.1 | PROTEIN DIAPHANOUS |
| Bpl_scaf_62567-0.12 | PROTEIN DIAPHANOUS |
| Bpl_scaf_62567-0.9 | |
| Bpl_scaf_62567-1.1 | |
| Bpl_scaf_62567-1.16 | TRANSCRIPTION INITIATION FACTOR TFIID |
| Bpl_scaf_62567-1.17 | GEO05313P1 |
| Bpl_scaf_62567-1.18 | CRAMPED PROTEIN |
| Bpl_scaf_62567-1.19 | SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED |
| Bpl_scaf_62576-0.0 | |
| Bpl_scaf_62577-0.5 | |
| Bpl_scaf_62577-1.1 | OS10G0105400 PROTEIN |
| Bpl_scaf_62577-1.10 | OS10G0105400 PROTEIN |
| Bpl_scaf_62577-1.12 | OS10G0105400 PROTEIN |
| Bpl_scaf_62577-2.10 | DEATH DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_62577-2.13 | |
| Bpl_scaf_62577-2.4 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
| Bpl_scaf_62577-2.9 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_62577-3.10 | TRANSMEMBRANE 7 SUPERFAMILY MEMBER 3 |
| Bpl_scaf_62577-3.9 | RHO FAMILY GTPASE |
| Bpl_scaf_62578-0.3 | |
| Bpl_scaf_62581-0.0 | FTP DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_62583-0.1 | |
| Bpl_scaf_62587-0.2 | |
| Bpl_scaf_62587-1.5 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
| Bpl_scaf_62587-2.14 | - |
| Bpl_scaf_62587-2.19 | |
| Bpl_scaf_62587-2.20 | |
| Bpl_scaf_62587-2.22 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_62587-2.3 | TATA-BOX BINDING PROTEIN |
| Bpl_scaf_62587-3.11 | |
| Bpl_scaf_62587-3.12 | INHIBITOR OF APOPTOSIS |
| Bpl_scaf_62587-3.7 |
