About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_030866-T1I[[H]] CHANNEL, ISOFORM E
LLU|FUN_030867-T1I[[H]] CHANNEL, ISOFORM E
LLU|FUN_030868-T1
LLU|FUN_030869-T1
LLU|FUN_030870-T1I[[H]] CHANNEL, ISOFORM E
LLU|FUN_030871-T1
LLU|FUN_030872-T1
LLU|FUN_030873-T1
LLU|FUN_030874-T1
LLU|FUN_030875-T1UNCHARACTERIZED
LLU|FUN_030876-T1CASEIN KINASE-RELATED
LLU|FUN_030877-T1
LLU|FUN_030878-T1PCNA-ASSOCIATED FACTOR
LLU|FUN_030879-T1THYROID RECEPTOR INTERACTING PROTEIN RELATED
LLU|FUN_030880-T1
LLU|FUN_030881-T1
LLU|FUN_030882-T1
LLU|FUN_030883-T1
LLU|FUN_030884-T1N-ACETYLGLUCOSAMINYLTRANSFERASE VI
LLU|FUN_030885-T1
LLU|FUN_030886-T1
LLU|FUN_030887-T1N-ACETYLGLUCOSAMINYLTRANSFERASE VI
LLU|FUN_030888-T1TOLL-LIKE RECEPTOR 7-RELATED
LLU|FUN_030889-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
LLU|FUN_030890-T1UNCHARACTERIZED
LLU|FUN_030891-T1ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING
LLU|FUN_030892-T1
LLU|FUN_030893-T1
LLU|FUN_030894-T1
LLU|FUN_030895-T1
LLU|FUN_030896-T1PROTEIN PITCHFORK
LLU|FUN_030897-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
LLU|FUN_030898-T1CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
LLU|FUN_030899-T1HOMER
LLU|FUN_030900-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
LLU|FUN_030901-T1
LLU|FUN_030902-T1
LLU|FUN_030903-T1PROTHORACICOTROPIC HORMONE, ISOFORM F
LLU|FUN_030904-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 171
LLU|FUN_030905-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 171
LLU|FUN_030906-T1
LLU|FUN_030907-T1
LLU|FUN_030908-T1
LLU|FUN_030909-T1
LLU|FUN_030910-T1DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
LLU|FUN_030911-T1
LLU|FUN_030912-T1ZINC FINGER AND SCAN DOMAIN-CONTAINING
LLU|FUN_030913-T1
LLU|FUN_030914-T1
LLU|FUN_030915-T1NUCLEAR PROTEIN E3-3
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