About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_030712-T1PHOSPHOSERINE PHOSPHATASE
LLU|FUN_030713-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
LLU|FUN_030714-T1
LLU|FUN_030715-T1
LLU|FUN_030716-T1
LLU|FUN_030717-T1ZINC/IRON TRANSPORTER
LLU|FUN_030718-T1
LLU|FUN_030719-T1
LLU|FUN_030720-T1SPERM SPECIFIC ANTIGEN 2-RELATED
LLU|FUN_030721-T1PANTOTHENATE KINASE
LLU|FUN_030722-T1
LLU|FUN_030723-T1
LLU|FUN_030724-T1
LLU|FUN_030725-T1
LLU|FUN_030726-T1SEC14 RELATED PROTEIN
LLU|FUN_030727-T1SERINE/THREONINE PROTEIN PHOSPHATASE
LLU|FUN_030728-T1
LLU|FUN_030729-T1
LLU|FUN_030730-T1
LLU|FUN_030731-T1
LLU|FUN_030732-T1
LLU|FUN_030733-T1UNCHARACTERIZED
LLU|FUN_030734-T1ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2
LLU|FUN_030735-T1
LLU|FUN_030736-T1
LLU|FUN_030737-T1
LLU|FUN_030738-T1CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN
LLU|FUN_030739-T1SRC-ASSOCIATED ADAPTOR PROTEIN
LLU|FUN_030740-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
LLU|FUN_030741-T1METAXIN RELATED
LLU|FUN_030742-T1ARMADILLO-TYPE FOLD-RELATED
LLU|FUN_030743-T1FORMATE LYASE ACTIVATING ENZYME, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G15630)-RELATED
LLU|FUN_030744-T1ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
LLU|FUN_030745-T1CHIMERIN FAMILY MEMBER
LLU|FUN_030746-T1
LLU|FUN_030747-T1-
LLU|FUN_030748-T1
LLU|FUN_030749-T1
LLU|FUN_030750-T1
LLU|FUN_030751-T1
LLU|FUN_030752-T1
LLU|FUN_030753-T1
LLU|FUN_030754-T1SOLUTE CARRIER FAMILY 13 MEMBER
LLU|FUN_030755-T1SOLUTE CARRIER FAMILY 13 MEMBER
LLU|FUN_030756-T1SOLUTE CARRIER FAMILY 13 MEMBER
LLU|FUN_030757-T1
LLU|FUN_030758-T1D-DOPACHROME DECARBOXYLASE
LLU|FUN_030759-T1SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL
LLU|FUN_030760-T1
LLU|FUN_030761-T1
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