About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8026522.1SYNAPTIC VESICLE GLYCOPROTEIN 2
CAI8026521.1SYNAPTIC VESICLE GLYCOPROTEIN 2
CAI8026523.1GTPASE, IMAP FAMILY MEMBER-RELATED
CAI8026524.1
CAI8026525.1YNEIN REGULATORY COMPLEX SUBUNIT 5
CAI8026526.1
CAI8026527.1PROTEIN CBG26694
CAI8026528.1
CAI8026530.1
CAI8026529.1
CAI8026532.1SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
CAI8026531.1SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
CAI8026533.1SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
CAI8026534.1FERROCHELATASE
CAI8026535.1LD44762P
CAI8026536.1LD44762P
CAI8026537.1CALCIUM BINDING PROTEIN
CAI8026538.1CALCIUM BINDING PROTEIN
CAI8026539.1CALCIUM BINDING PROTEIN
CAI8026540.1
CAI8026541.1
CAI8026542.1UNCHARACTERIZED
CAI8026543.1LD33804P
CAI8026544.1
CAI8026545.1
CAI8026546.1
CAI8026547.1
CAI8026553.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8026552.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8026549.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8026551.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8026550.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8026548.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8026554.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8026555.1
CAI8026557.1
CAI8026556.1
CAI8026558.1
CAI8026559.1
CAI8026561.1
CAI8026560.1
CAI8026562.1LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
CAI8026563.1LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
CAI8026566.1ANKYRIN REPEAT AND EF-HAND DOMAIN-CONTAINING PROTEIN 1
CAI8026565.1ANKYRIN REPEAT AND EF-HAND DOMAIN-CONTAINING PROTEIN 1
CAI8026564.1ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1
CAI8026567.1ANKYRIN REPEAT AND EF-HAND DOMAIN-CONTAINING PROTEIN 1
CAI8026568.1
CAI8026569.1
CAI8026570.1
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