About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8026621.1INTERFERON REGULATORY FACTOR
CAI8026622.1
CAI8026623.1DISEASE RESISTANCE PROTEIN RP
CAI8026624.1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
CAI8026625.1
CAI8026626.1PROHIBITIN
CAI8026627.1PROHIBITIN
CAI8026628.1PROHIBITIN
CAI8026633.1APG9 AUTOPHAGY 9
CAI8026634.1APG9 AUTOPHAGY 9
CAI8026632.1APG9 AUTOPHAGY 9
CAI8026631.1APG9 AUTOPHAGY 9
CAI8026629.1APG9 AUTOPHAGY 9
CAI8026630.1APG9 AUTOPHAGY 9
CAI8026635.1APG9 AUTOPHAGY 9
CAI8026636.1APG9 AUTOPHAGY 9
CAI8026637.1APG9 AUTOPHAGY 9
CAI8026638.1
CAI8026639.1
CAI8026640.1CYTOCHROME C OXIDASE ASSEMBLY FACTOR 1 HOMOLOG
CAI8026641.1
CAI8026642.1
CAI8026643.1
CAI8026644.1
CAI8026645.1
CAI8026646.1DELTEX-RELATED
CAI8026647.1
CAI8026649.1DELTEX-RELATED
CAI8026651.1DELTEX-RELATED
CAI8026650.1DELTEX-RELATED
CAI8026648.1DELTEX-RELATED
CAI8026652.1DELTEX-RELATED
CAI8026653.1UNCHARACTERIZED
CAI8026654.1
CAI8026655.1
CAI8026656.1UNCHARACTERIZED
CAI8026657.1FERREDOXIN-RELATED
CAI8026658.1FERREDOXIN-RELATED
CAI8026659.1MYOTONIC DYSTROPHY S/T KINASE-RELATED
CAI8026660.1
CAI8026662.1TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2
CAI8026661.1TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2
CAI8026663.1
CAI8026664.1SERINE/ARGININE RICH SPLICING FACTOR
CAI8026665.1VITAMIN K EPOXIDE REDUCTASE COMPLEX, SUBUNIT 1
CAI8026668.1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA
CAI8026669.1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA
CAI8026667.1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA
CAI8026666.1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA
CAI8026670.1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA
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