About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 577 578 579 580 581 582 583 584 585 586 Forward> Last>>        1226 pages in total

Gene IDDescription
CAI8026470.1PHOSPHOFRUCTOKINASE
CAI8026474.1PHOSPHOGLYCERATE KINASE
CAI8026473.1PHOSPHOGLYCERATE KINASE
CAI8026472.1PHOSPHOGLYCERATE KINASE
CAI8026475.1PHOSPHOGLYCERATE KINASE
CAI8026477.1TRIOSEPHOSPHATE ISOMERASE
CAI8026476.1TRIOSEPHOSPHATE ISOMERASE
CAI8026479.1TRIOSEPHOSPHATE ISOMERASE
CAI8026478.1TRIOSEPHOSPHATE ISOMERASE
CAI8026480.1DNA POLYMERASE III SUBUNIT ALPHA
CAI8026482.1METHIONINE AMINOPEPTIDASE
CAI8026481.1METHIONINE AMINOPEPTIDASE
CAI8026484.1ATP-BINDING CASSETTE SUB-FAMILY B
CAI8026483.1ATP-BINDING CASSETTE SUB-FAMILY B
CAI8026485.11-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED
CAI8026486.1GLYCOLATE OXIDASE SUBUNIT GLCD
CAI8026487.1GLYCOLATE OXIDASE SUBUNIT GLCD
CAI8026488.1GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE
CAI8026489.1
CAI8026490.1HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED
CAI8026491.1HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED
CAI8026492.1HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED
CAI8026493.1UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED
CAI8026494.1DNA PRIMASE
CAI8026495.1DNA PRIMASE
CAI8026496.1
CAI8026497.1
CAI8026498.1TRANSCRIPTION TERMINATION FACTOR RHO
CAI8026499.1TRANSCRIPTION TERMINATION FACTOR RHO
CAI8026500.1TRANSCRIPTION TERMINATION FACTOR RHO
CAI8026501.1TRANSCRIPTION TERMINATION FACTOR RHO
CAI8026502.150S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC
CAI8026503.1
CAI8026504.1MEMBRANE PROTEIN-RELATED
CAI8026505.1LD18447P
CAI8026506.1LD18447P
CAI8026507.1LD18447P
CAI8026508.1DNA REPAIR PROTEIN RADA
CAI8026509.1DNA REPAIR PROTEIN RADA
CAI8026510.1DNA REPAIR PROTEIN RADA
CAI8026511.1DNA REPAIR PROTEIN RADA
CAI8026512.1DNA REPAIR PROTEIN RADA
CAI8026513.1RECA
CAI8026514.1HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE
CAI8026515.1HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE
CAI8026516.1
CAI8026517.1GLYCOGEN SYNTHASE KINASE-3 ALPHA
CAI8026518.1
CAI8026520.1SYNAPTIC VESICLE GLYCOPROTEIN 2
CAI8026519.1SYNAPTIC VESICLE GLYCOPROTEIN 2
TOP