About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8026421.1MIR DOMAIN-CONTAINING PROTEIN
CAI8026422.1MIR DOMAIN-CONTAINING PROTEIN
CAI8026423.1MIR DOMAIN-CONTAINING PROTEIN
CAI8026424.1MIR DOMAIN-CONTAINING PROTEIN
CAI8026425.1
CAI8026427.1
CAI8026426.1
CAI8026429.1
CAI8026428.1
CAI8026430.1
CAI8026431.1
CAI8026432.1PERSULFIDE DIOXYGENASE ETHE1
CAI8026433.1PERSULFIDE DIOXYGENASE ETHE1
CAI8026434.1PERSULFIDE DIOXYGENASE ETHE1
CAI8026435.1PERSULFIDE DIOXYGENASE ETHE1
CAI8026436.1PERSULFIDE DIOXYGENASE ETHE1
CAI8026437.1
CAI8026438.1BLL1576 PROTEIN
CAI8026439.1PHP DOMAIN PROTEIN
CAI8026440.1L-THREONINE 3-DEHYDROGENASE
CAI8026441.12-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE
CAI8026442.1
CAI8026443.1TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN TSAE
CAI8026444.1NUCLEOSIDE DIPHOSPHATE KINASE
CAI8026445.1NUCLEOSIDE DIPHOSPHATE KINASE
CAI8026446.1NUCLEOSIDE DIPHOSPHATE KINASE
CAI8026447.1NUCLEOSIDE DIPHOSPHATE KINASE
CAI8026448.1IOJAP SUPERFAMILY ORTHOLOG
CAI8026449.1
CAI8026450.1BIOTIN SYNTHASE
CAI8026451.1NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT A
CAI8026452.1NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT A
CAI8026453.1ELECTRON TRANSPORT COMPLEX PROTEIN RNFD
CAI8026454.1ELECTRON TRANSPORT COMPLEX PROTEIN RNFD
CAI8026455.1ELECTRON TRANSPORT COMPLEX PROTEIN RNFE
CAI8026457.1NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT
CAI8026456.1NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT
CAI8026458.1ATP SYNTHASE SUBUNIT A
CAI8026459.1
CAI8026460.1ATP SYNTHASE DELTA CHAIN
CAI8026461.1ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL
CAI8026462.1ATP SYNTHASE GAMMA CHAIN
CAI8026463.1ATP SYNTHASE
CAI8026467.1PHOSPHOFRUCTOKINASE
CAI8026464.1PHOSPHOFRUCTOKINASE
CAI8026468.1PHOSPHOFRUCTOKINASE
CAI8026466.1PHOSPHOFRUCTOKINASE
CAI8026465.1PHOSPHOFRUCTOKINASE
CAI8026469.1PHOSPHOFRUCTOKINASE
CAI8026471.1PHOSPHOFRUCTOKINASE
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