About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8026371.1NADPH NITROREDUCTASE
CAI8026372.1SLR1406 PROTEIN
CAI8026373.1
CAI8026374.1ACYL-COA DEHYDROGENASE
CAI8026375.1H REPEAT-ASSOCIATED PREDICTED TRANSPOSASE
CAI8026376.1BONUS, ISOFORM C-RELATED
CAI8026377.1
CAI8026378.1
CAI8026379.160S/50S RIBOSOMAL PROTEIN L6/L9
CAI8026380.1MITOCHONDRIAL RIBOSOMAL PROTEIN S5
CAI8026381.150S RIBOSOMAL PROTEIN L15
CAI8026382.1SECY/SEC61-ALPHA FAMILY MEMBER
CAI8026383.1NUCLEOTIDE KINASE
CAI8026384.1METHIONINE AMINOPEPTIDASE
CAI8026388.1CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI_1454-RELATED
CAI8026385.130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18
CAI8026386.130S 40S RIBOSOMAL PROTEIN
CAI8026387.1
CAI8026389.1RIBOSOMAL PROTEIN L13
CAI8026390.1RIBOSOMAL PROTEIN S9
CAI8026391.1RIBOSOMAL PROTEIN S9
CAI8026392.1PHOSPHOMANNOMUTASE 45A
CAI8026399.1S-ADENOSYLMETHIONINE SYNTHETASE
CAI8026397.1S-ADENOSYLMETHIONINE SYNTHETASE
CAI8026396.1S-ADENOSYLMETHIONINE SYNTHETASE
CAI8026395.1S-ADENOSYLMETHIONINE SYNTHETASE
CAI8026398.1S-ADENOSYLMETHIONINE SYNTHETASE
CAI8026394.1S-ADENOSYLMETHIONINE SYNTHETASE
CAI8026393.1S-ADENOSYLMETHIONINE SYNTHETASE
CAI8026404.1ADENOSYLHOMOCYSTEINASE
CAI8026403.1ADENOSYLHOMOCYSTEINASE
CAI8026402.1ADENOSYLHOMOCYSTEINASE
CAI8026401.1ADENOSYLHOMOCYSTEINASE
CAI8026400.1ADENOSYLHOMOCYSTEINASE
CAI8026406.1S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE
CAI8026405.1S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE
CAI8026407.1PQQ ENZYME REPEAT PROTEIN-RELATED
CAI8026408.1METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE
CAI8026409.1NICOTINATE PHOSPHORIBOSYLTRANSFERASE
CAI8026410.1NICOTINATE PHOSPHORIBOSYLTRANSFERASE
CAI8026411.1ACYL-COA DEHYDROGENASE
CAI8026412.1
CAI8026413.1LUCIFERASE-LIKE MONOOXYGENASE
CAI8026414.1N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED
CAI8026415.1
CAI8026416.1GLYCINE DEHYDROGENASE, DECARBOXYLATING
CAI8026418.1RYANODINE RECEPTOR AND IP3 RECEPTOR
CAI8026417.1MIR DOMAIN-CONTAINING PROTEIN
CAI8026420.1RYANODINE RECEPTOR AND IP3 RECEPTOR
CAI8026419.1MIR DOMAIN-CONTAINING PROTEIN
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