About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8026171.1THIAZOLE SYNTHASE
CAI8026170.1THIAZOLE SYNTHASE
CAI8026173.1SARCOSINE DEHYDROGENASE-RELATED
CAI8026174.1ARSENICAL PUMP-DRIVING ATPASE ARSENITE-TRANSLOCATING ATPASE
CAI8026175.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
CAI8026176.1PROTEASE 4
CAI8026177.1
CAI8026178.1RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN
CAI8026179.1BCDNA.GH03377
CAI8026180.1
CAI8026181.1L-ORNITHINE N(5)-MONOOXYGENASE-RELATED
CAI8026182.1L-ORNITHINE N(5)-MONOOXYGENASE-RELATED
CAI8026184.1OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870)
CAI8026183.1DEHYDROGENASES, SHORT CHAIN
CAI8026185.1
CAI8026186.1
CAI8026187.1BCDNA.GH03377
CAI8026188.1DNA-3-METHYLADENINE GLYCOSYLASE 1
CAI8026189.1REPLICATIVE DNA HELICASE DNAB
CAI8026190.150S RIBOSOMAL PROTEIN L9
CAI8026191.1BIFUNCTIONAL TH2 PROTEIN
CAI8026193.1KETOACID-COENZYME A TRANSFERASE
CAI8026192.1KETOACID-COENZYME A TRANSFERASE
CAI8026194.1LIPOPROTEIN-RELATED
CAI8026195.1
CAI8026196.1
CAI8026200.1TRANSCRIPTION INITIATION FACTOR TFIID
CAI8026202.1TRANSCRIPTION INITIATION FACTOR TFIID
CAI8026199.1TRANSCRIPTION INITIATION FACTOR TFIID
CAI8026201.1TRANSCRIPTION INITIATION FACTOR TFIID
CAI8026203.1TRANSCRIPTION INITIATION FACTOR TFIID
CAI8026204.1TRANSCRIPTION INITIATION FACTOR TFIID
CAI8026205.1TRANSCRIPTION INITIATION FACTOR TFIID
CAI8026206.1TRANSCRIPTION INITIATION FACTOR TFIID
CAI8026207.1TRANSCRIPTION INITIATION FACTOR TFIID
CAI8026208.1TRANSCRIPTION INITIATION FACTOR TFIID
CAI8026198.1
CAI8026197.1
CAI8026209.1
CAI8026210.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8026214.1LIM DOMAIN KINASE 1
CAI8026213.1LIM DOMAIN KINASE 1
CAI8026212.1LIM DOMAIN KINASE 1
CAI8026211.1LIM DOMAIN KINASE 1
CAI8026215.1LIM DOMAIN KINASE 1
CAI8026216.1LIM DOMAIN KINASE 1
CAI8026218.1TELOMERASE RNA COMPONENT INTERACTING RNASE
CAI8026217.1
CAI8026220.1LD24721P
CAI8026219.1LD24721P
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