About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8026021.1FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE
CAI8026022.1SLL0198 PROTEIN-RELATED
CAI8026025.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
CAI8026024.1FCH AND DOUBLE SH3 DOMAINS PROTEIN
CAI8026023.1
CAI8026026.1
CAI8026027.1
CAI8026028.1
CAI8026029.1DEOXYNUCLEOSIDE KINASE
CAI8026030.1DEOXYNUCLEOSIDE KINASE
CAI8026031.1
CAI8026032.12-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC
CAI8026033.12-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC
CAI8026034.1SERINE ACETYLTRANSFERASE
CAI8026035.1FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS 1
CAI8026036.1FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS 1
CAI8026038.1GLUTAMATE DEHYDROGENASE
CAI8026037.1GLUTAMATE DEHYDROGENASE
CAI8026040.1PSEUDOURIDYLATE SYNTHASE
CAI8026039.1PSEUDOURIDYLATE SYNTHASE
CAI8026042.1PROTEASE HTPX
CAI8026041.1PROTEASE HTPX
CAI8026043.1ATP-DEPENDENT CLP PROTEASE
CAI8026044.1ATP-DEPENDENT CLP PROTEASE
CAI8026045.1ATP-DEPENDENT CLP PROTEASE
CAI8026046.1ATP-DEPENDENT CLP PROTEASE
CAI8026047.1PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE-RELATED
CAI8026048.1PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE-RELATED
CAI8026049.1WINGED HELIX-TURN-HELIX TRANSCRIPTIONAL REGULATOR, RRF2 FAMILY
CAI8026050.1UBIQUITIN-ACTIVATING ENZYME E1
CAI8026051.1CYSTATHIONINE BETA-SYNTHASE
CAI8026052.1CYSTATHIONINE BETA-SYNTHASE
CAI8026053.1TRANSCRIPTION TERMINATION FACTOR NUSA
CAI8026054.1TRANSCRIPTION TERMINATION FACTOR NUSA
CAI8026055.1BLL0784 PROTEIN
CAI8026056.1TRANSLATION INITIATION FACTOR IF-2-RELATED
CAI8026057.1LEXA REPRESSOR
CAI8026058.130S RIBOSOMAL PROTEIN S20
CAI8026059.1HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE
CAI8026060.1DNA GYRASE/TOPOISOMERASE SUBUNIT B
CAI8026061.1
CAI8026062.17,8-DIHYDRO-6-HYDROXYMETHYLPTERIN DIMETHYLTRANSFERASE
CAI8026063.1INNER MEMBRANE PROTEIN YGIH
CAI8026067.1
CAI8026064.1
CAI8026065.1
CAI8026066.1
CAI8026068.1
CAI8026069.1
CAI8026070.1
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